Home LiteratureArticle Details
PMID: 154673 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Interesting and unusual features in the sequence of Neurospora crassa mitochondrial tyrosine transfer RNA.

Heckman JE, Alzner-Deweerd B, RajBhandary UL

Abstract

The mitochondrial tyrosine tRNA from Neurospora crassa has been sequenced and found to have several interesting features: (i) It resembles prokaryotic rather than eukaryotic tyrosine tRNAs in that it possesses a large variable loop (loop III); moreover, it can be quantitatively aminoacylated by Escherichia coli tyrosyl-tRNA synthetase but not by yeast tyrosyl-tRNA synthetase. (ii) This tRNA differs from all tRNA's sequenced to date in lacking the A residue at position 14 and the constant purine residue at position 15, two nucleosides that have been found so far in loop I of all tRNA's and that have been implicated in base-base tertiary interactions, respectively, with the universal U residue at position 8 and the constant pyrimidine residue at the end of loop III. (iii) Unlike the N. crassa mitochondrial initiator tRNA, this tRNA contains the usual TpsiC sequence in loop IV and the highly conserved GG sequence in loop I common to other tRNAs.

MeSH Terms
Base Sequence Biological Evolution DNA, Mitochondrial/genetics Neurospora/genetics Neurospora crassa/genetics Nucleic Acid Conformation RNA, Transfer/genetics Ribonucleotides/analysis Tyrosine
Chemicals
DNA, Mitochondrial Ribonucleotides Tyrosine RNA, Transfer
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Heckman J E
Alzner-Deweerd B
RajBhandary U L
References (27)
27 references, click to expand
  1. Formylatable methionine transfer RNA from Mycoplasma: purification and comparison of partial nucleotide sequences with those of other prokaryotic initiator tRNAs.
    Nucleic Acids Res. 1975 Jan;2(1):61-78 PMID: 1093144
  2. Comparison of cytoplasmic and mitochondrial 4 S RNA from cultured hamster cells: physical and metabolic properties.
    J Mol Biol. 1972 Nov 14;71(2):163-75 PMID: 4117925
  3. Structures of two glycyl-tRNAs from Staphylococcus epidermidis.
    Nat New Biol. 1972 May 10;237(71):44-5 PMID: 4503743
  4. Mitochondrial RNA in Xenopus laevis. II. Molecular weights and other physical properties of mitochondrial ribosomal and 4 s RNA.
    J Mol Biol. 1972 Jan 28;63(2):217-31 PMID: 4564178
  5. Absence of the sequence G-T-psi-C-G(A)- in several eukaryotic cytoplasmic initiator transfer RNAs.
    Proc Natl Acad Sci U S A. 1973 Apr;70(4):1041-5 PMID: 4577787
  6. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.
    Science. 1974 Aug 2;185(4149):435-40 PMID: 4601792
  7. Structure of yeast phenylalanine tRNA at 3 A resolution.
    Nature. 1974 Aug 16;250(467):546-51 PMID: 4602655
  8. Partial digestion with ribonuclease T 1 and derivation of the complete sequence of tyrosine transfer ribonucleic acid from Torulopsis utilis.
    J Biochem. 1972 Jul;72(1):123-4 PMID: 4672191
  9. A two-dimensional fractionation procedure for radioactive nucleotides.
    J Mol Biol. 1965 Sep;13(2):373-98 PMID: 5325727
  10. A ribonuclease from Physarum. Biochemical properties and synthesis in the mitotic cycle.
    Biochim Biophys Acta. 1969 Nov 19;195(1):87-98 PMID: 5390539
  11. Amber suppression: a nucleotide change in the anticodon of a tyrosine transfer RNA.
    Nature. 1968 Mar 16;217(5133):1019-24 PMID: 5643523
  12. N-formylmethionyl transfer RNA in mitochondria from yeast and rat liver.
    J Mol Biol. 1968 Dec 14;38(2):241-3 PMID: 5760639
  13. A simple method for the preparation of 32-P-labelled adenosine triphosphate of high specific activity.
    Biochem J. 1964 Jan;90(1):147-9 PMID: 5832284
  14. Nucleotide sequence of a yeast tyrosine transfer RNA.
    Science. 1966 Jul 29;153(3735):531-4 PMID: 5938777
  15. Studies on polynucleotides, lxviii the primary structure of yeast phenylalanine transfer RNA.
    Proc Natl Acad Sci U S A. 1967 Mar;57(3):751-8 PMID: 16591527
  16. Sequence analysis of 5'[32P] labeled mRNA and tRNA using polyacrylamide gel electrophoresis.
    Nucleic Acids Res. 1978 Jan;5(1):37-56 PMID: 25417
  17. Transfer RNA: molecular structure, sequence, and properties.
    Annu Rev Biochem. 1976;45:805-60 PMID: 60910
  18. Structure and function of initiator methionine tRNA from the mitochondria of Neurospora crassa.
    Cell. 1978 Jan;13(1):83-95 PMID: 145896
  19. The use of nuclease P1 in sequence analysis of end group labeled RNA.
    Nucleic Acids Res. 1977 Dec;4(12):4091-108 PMID: 202925
  20. The nucleoside sequence of tyrosine tRNA from Bacillus stearothermophilus.
    Nucleic Acids Res. 1978 Jan;5(1):23-36 PMID: 347395
  21. Studies on the sequence of the 3'-terminal region of turnip-yellow-mosaic-virus RNA.
    Eur J Biochem. 1977 Feb;72(3):465-78 PMID: 402264
  22. Mapping adenines, guanines, and pyrimidines in RNA.
    Nucleic Acids Res. 1977 Aug;4(8):2527-38 PMID: 409999
  23. Collection of published tRNA sequences.
    Nucleic Acids Res. 1978 May;5(5):r15-r27 PMID: 662690
  24. Structural domains of transfer RNA molecules.
    Science. 1976 Nov 19;194(4267):796-806 PMID: 790568
  25. Wheat embryo mitochondrial 18S ribosomal RNA: evidence for its prokaryotic nature.
    Nucleic Acids Res. 1977 Mar;4(3):663-71 PMID: 866186
  26. New rapid gel sequencing method for RNA.
    Nature. 1977 Oct 27;269(5631):833-6 PMID: 927512
  27. Nucleotide sequence of salmon testes and salmon liver cytoplasmic initiator tRNA.
    Cell. 1975 Nov;6(3):395-405 PMID: 1053250
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1979-02-00
Pages
717-21
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC383028
Subset
IM
Databases
GENBANK
K00271
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]