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PMID: 15608179 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The ProDom database of protein domain families: more emphasis on 3D.

Nucleic acids research ·Vol. 33 ·No. Database issue ·2005-01-01 ·Pages D212-5

Bru C, Courcelle E, Carrère S, Beausse Y, Dalmar S, Kahn D

Abstract

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.

MeSH Terms
Computer Graphics Databases, Protein Genomics Internet Models, Molecular Protein Structure, Tertiary Proteins/chemistry,classification Sequence Alignment Sequence Analysis, Protein User-Computer Interface
Chemicals
Proteins
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Bru Catherine
Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS, BP 27, F-31326 Castanet-Tolosan Cedex, France.
Courcelle Emmanuel
Carrère Sébastien
Beausse Yoann
Dalmar Sandrine
Kahn Daniel
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gki034
Published
2005-01-01
Pages
D212-5
Language
English
Region
England
NLM ID
0411011
PMCID
PMC539988
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gki034 PMC Full Text View journal details
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