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PMID: 15608223 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

FlyBase: genes and gene models.

Nucleic acids research ·Vol. 33 ·No. Database issue ·2005-01-01 ·Pages D390-5

Drysdale RA, Crosby MA, FlyBase Consortium

Abstract

FlyBase (http://flybase.org) is the primary repository of genetic and molecular data of the insect family Drosophilidae. For the most extensively studied species, Drosophila melanogaster, a wide range of data are presented in integrated formats. Data types include mutant phenotypes, molecular characterization of mutant alleles and aberrations, cytological maps, wild-type expression patterns, anatomical images, transgenic constructs and insertions, sequence-level gene models and molecular classification of gene product functions. There is a growing body of data for other Drosophila species; this is expected to increase dramatically over the next year, with the completion of draft-quality genomic sequences of an additional 11 Drosophila species.

MeSH Terms
Animals Chromosome Mapping Databases, Genetic Drosophila/genetics Drosophila Proteins/chemistry,genetics,physiology Drosophila melanogaster/genetics,physiology Genes, Insect Genome Models, Genetic
Chemicals
Drosophila Proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Drysdale Rachel A
Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK. [email protected]
Crosby Madeline A
FlyBase Consortium
References (19)
19 references, click to expand
  1. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.
    Genome Biol. 2002;3(12):RESEARCH0079 PMID: 12537568
  2. The FlyBase database of the Drosophila genome projects and community literature.
    Nucleic Acids Res. 2003 Jan 1;31(1):172-5 PMID: 12519974
  3. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
    Genome Biol. 2002;3(12):RESEARCH0083 PMID: 12537572
  4. The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
    Genome Biol. 2002;3(12):RESEARCH0084 PMID: 12537573
  5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.
    Genome Biol. 2002;3(12):RESEARCH0085 PMID: 12537574
  6. Systematic determination of patterns of gene expression during Drosophila embryogenesis.
    Genome Biol. 2002;3(12):RESEARCH0088 PMID: 12537577
  7. The GRID: the General Repository for Interaction Datasets.
    Genome Biol. 2003;4(3):R23 PMID: 12620108
  8. Assessment of genome-wide protein function classification for Drosophila melanogaster.
    Genome Res. 2003 Sep;13(9):2118-28 PMID: 12952880
  9. PANTHER: a library of protein families and subfamilies indexed by function.
    Genome Res. 2003 Sep;13(9):2129-41 PMID: 12952881
  10. UniProt: the Universal Protein knowledgebase.
    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9 PMID: 14681372
  11. The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61 PMID: 14681407
  12. Functional proteomics mapping of a human signaling pathway.
    Genome Res. 2004 Jul;14(7):1324-32 PMID: 15231748
  13. The Interactive Fly: gene networks, development and the Internet.
    Trends Genet. 1999 Aug;15(8):333-4 PMID: 10431196
  14. The genome sequence of Drosophila melanogaster.
    Science. 2000 Mar 24;287(5461):2185-95 PMID: 10731132
  15. Phenotypic data in FlyBase.
    Brief Bioinform. 2001 Mar;2(1):68-80 PMID: 11465064
  16. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
    Nucleic Acids Res. 2002 Jan 1;30(1):207-10 PMID: 11752295
  17. Gene expression during the life cycle of Drosophila melanogaster.
    Science. 2002 Sep 27;297(5590):2270-5 PMID: 12351791
  18. The generic genome browser: a building block for a model organism system database.
    Genome Res. 2002 Oct;12(10):1599-610 PMID: 12368253
  19. Apollo: a sequence annotation editor.
    Genome Biol. 2002;3(12):RESEARCH0082 PMID: 12537571
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2005-01-01
Pages
D390-5
Language
English
Region
England
NLM ID
0411011
PMCID
PMC540000
Subset
IM
Grants
NHGRI NIH HHS · P41 HG000739 · United States
NHGRI NIH HHS · P41 HG00739 · United States
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