Home LiteratureArticle Details
PMID: 15772288 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Sites and regulation of auxin biosynthesis in Arabidopsis roots.

The Plant cell ·Vol. 17 ·No. 4 ·2005-04-00 ·Pages 1090-104

Ljung K, Hull AK, Celenza J, Yamada M, Estelle M, Normanly J, Sandberg G

Abstract

Auxin has been shown to be important for many aspects of root development, including initiation and emergence of lateral roots, patterning of the root apical meristem, gravitropism, and root elongation. Auxin biosynthesis occurs in both aerial portions of the plant and in roots; thus, the auxin required for root development could come from either source, or both. To monitor putative internal sites of auxin synthesis in the root, a method for measuring indole-3-acetic acid (IAA) biosynthesis with tissue resolution was developed. We monitored IAA synthesis in 0.5- to 2-mm sections of Arabidopsis thaliana roots and were able to identify an important auxin source in the meristematic region of the primary root tip as well as in the tips of emerged lateral roots. Lower but significant synthesis capacity was observed in tissues upward from the tip, showing that the root contains multiple auxin sources. Root-localized IAA synthesis was diminished in a cyp79B2 cyp79B3 double knockout, suggesting an important role for Trp-dependent IAA synthesis pathways in the root. We present a model for how the primary root is supplied with auxin during early seedling development.

MeSH Terms
Arabidopsis/growth & development,metabolism Biological Assay/methods Cell Differentiation/genetics Cytochrome P-450 Enzyme System/genetics,metabolism Gene Expression Regulation, Plant/genetics Growth Inhibitors/pharmacology Indoleacetic Acids/analysis,metabolism Meristem/growth & development,metabolism Molecular Sequence Data Mutation/genetics Plant Roots/chemistry,growth & development,metabolism Seedlings/growth & development,metabolism
Chemicals
Growth Inhibitors Indoleacetic Acids indoleacetic acid Cytochrome P-450 Enzyme System cytochrome P-450 CYP79B2, Sinapis alba cytochrome P-450 CYP79B3, Sinapis alba
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Ljung Karin
Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83, Umeå, Sweden.
Hull Anna K
Celenza John
Yamada Masashi
Estelle Mark
Normanly Jennifer
Sandberg Göran
References (53)
53 references, click to expand
  1. Pharmacological uses and perspectives of heavy water and deuterated compounds.
    Can J Physiol Pharmacol. 1999 Feb;77(2):79-88 PMID: 10535697
  2. Indole-3-acetic acid is synthesized from L-tryptophan in roots of Arabidopsis thaliana.
    Planta. 1998 Oct;206(3):362-9 PMID: 9763705
  3. AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis.
    Cell. 2002 Mar 8;108(5):661-73 PMID: 11893337
  4. The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis.
    Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14819-24 PMID: 11114200
  5. Gravity-regulated differential auxin transport from columella to lateral root cap cells.
    Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2987-91 PMID: 12594336
  6. The peri-cell-cycle in Arabidopsis.
    J Exp Bot. 2001 Mar;52(Spec Issue):403-11 PMID: 11326046
  7. A Microscale Technique for Gas Chromatography-Mass Spectrometry Measurements of Picogram Amounts of Indole-3-Acetic Acid in Plant Tissues.
    Plant Physiol. 1995 Jul;108(3):1043-1047 PMID: 12228526
  8. Basipetal auxin transport is required for gravitropism in roots of Arabidopsis.
    Plant Physiol. 2000 Feb;122(2):481-90 PMID: 10677441
  9. Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis.
    Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2379-84 PMID: 10681464
  10. Auxin transport - shaping the plant.
    Curr Opin Plant Biol. 2003 Feb;6(1):7-12 PMID: 12495745
  11. Auxin Biosynthesis during Seed Germination in Phaseolus vulgaris.
    Plant Physiol. 1992 Sep;100(1):509-17 PMID: 16652991
  12. A Myb homologue, ATR1, activates tryptophan gene expression in Arabidopsis.
    Proc Natl Acad Sci U S A. 1998 May 12;95(10):5655-60 PMID: 9576939
  13. Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth.
    Plant J. 2001 Nov;28(4):465-74 PMID: 11737783
  14. Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene.
    Plant Cell. 1997 Oct;9(10):1781-90 PMID: 9368415
  15. Deuterium in vivo labelling of cytokinins in Arabidopsis thaliana analysed by capillary liquid chromatography/frit-fast atom bombardment mass spectrometry.
    J Mass Spectrom. 2000 Jan;35(1):13-22 PMID: 10633230
  16. A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth. Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone.
    Plant Physiol. 2003 Jul;132(3):1138-48 PMID: 12857796
  17. Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana.
    Plant Mol Biol. 2002 Sep;50(2):309-32 PMID: 12175022
  18. Cytochrome P450 superfamily in Arabidopsis thaliana: isolation of cDNAs, differential expression, and RFLP mapping of multiple cytochromes P450.
    Plant Mol Biol. 1998 May;37(1):39-52 PMID: 9620263
  19. Enzymatic characterization of the recombinant Arabidopsis thaliana nitrilase subfamily encoded by the NIT2/NIT1/NIT3-gene cluster.
    Planta. 2001 Mar;212(4):508-16 PMID: 11525507
  20. Anthranilate synthase-anthranilate phosphoribosyltransferase complex and subunits of Salmonella typhimurium.
    Methods Enzymol. 1987;142:366-86 PMID: 3298980
  21. CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis.
    Plant Cell. 2001 Jan;13(1):101-11 PMID: 11158532
  22. Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis.
    Plant J. 2004 Mar;37(5):770-7 PMID: 14871316
  23. Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis.
    Nature. 2002 Feb 14;415(6873):806-9 PMID: 11845211
  24. The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis.
    Plant Physiol. 2005 Jan;137(1):253-62 PMID: 15579661
  25. Organization and cell differentiation in lateral roots of Arabidopsis thaliana.
    Development. 1997 Jan;124(1):33-44 PMID: 9006065
  26. Local, efflux-dependent auxin gradients as a common module for plant organ formation.
    Cell. 2003 Nov 26;115(5):591-602 PMID: 14651850
  27. Formation of lateral root meristems is a two-stage process.
    Development. 1995 Oct;121(10):3303-10 PMID: 7588064
  28. Mutations in Arabidopsis thaliana genes involved in the tryptophan biosynthesis pathway affect root waving on tilted agar surfaces.
    Plant J. 1998 Oct;16(2):145-54 PMID: 9839461
  29. Cell expansion in roots.
    Curr Opin Plant Biol. 2004 Feb;7(1):33-9 PMID: 14732439
  30. Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana.
    Plant Cell. 2004 Jul;16(7):1898-911 PMID: 15208397
  31. Shoot-derived auxin is essential for early lateral root emergence in Arabidopsis seedlings.
    Plant J. 2002 Feb;29(3):325-32 PMID: 11844109
  32. Root development.
    Curr Biol. 2000 Nov 16;10(22):R813-5 PMID: 11102819
  33. AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling.
    Plant Cell. 2002 Mar;14(3):589-97 PMID: 11910006
  34. Auxins and tropisms.
    J Plant Growth Regul. 2001 Sep;20(3):226-43 PMID: 12033223
  35. Dual metastable peak monitoring: application to the analysis of oestradiol-17 beta as the bis (tert-butyldimethylsilyl) ether.
    Biomed Mass Spectrom. 1985 Jan;12(1):19-24 PMID: 3157408
  36. Selected metastable peak monitoring: a new specific technique in quantitative gas chromatography mass spectrometry.
    Biomed Mass Spectrom. 1978 Sep;5(9):557-8 PMID: 708859
  37. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3.
    Genes Dev. 2002 Dec 1;16(23):3100-12 PMID: 12464638
  38. Auxin transport promotes Arabidopsis lateral root initiation.
    Plant Cell. 2001 Apr;13(4):843-52 PMID: 11283340
  39. Molecular cloning and characterization of aldehyde oxidases in Arabidopsis thaliana.
    Plant Cell Physiol. 1998 Apr;39(4):433-42 PMID: 9615466
  40. Biosynthesis of indole-3-acetic acid in tomato shoots: Measurement, mass-spectral identification and incorporation of (-2)H from (-2)H 2O into indole-3-acetic acid, D- and L-tryptophan, indole-3-pyruvate and tryptamine.
    Planta. 1991 Jun;184(3):368-76 PMID: 24194155
  41. Dissecting Arabidopsis lateral root development.
    Trends Plant Sci. 2003 Apr;8(4):165-71 PMID: 12711228
  42. Structural analysis of the nit2/nit1/nit3 gene cluster encoding nitrilases, enzymes catalyzing the terminal activation step in indole-acetic acid biosynthesis in Arabidopsis thaliana.
    Plant Mol Biol. 1998 Jan;36(1):89-99 PMID: 9484465
  43. Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid.
    J Biol Chem. 2000 Oct 27;275(43):33712-7 PMID: 10922360
  44. A role for nitrilase 3 in the regulation of root morphology in sulphur-starving Arabidopsis thaliana.
    Plant J. 2002 Apr;30(1):95-106 PMID: 11967096
  45. Expression patterns of duplicate tryptophan synthase beta genes in Arabidopsis thaliana.
    Plant Physiol. 1993 Jul;102(3):1019-26 PMID: 8278522
  46. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction.
    Plant Cell. 1995 Sep;7(9):1405-19 PMID: 8589625
  47. A gene expression map of the Arabidopsis root.
    Science. 2003 Dec 12;302(5652):1956-60 PMID: 14671301
  48. Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex.
    Genes Dev. 2001 Oct 15;15(20):2648-53 PMID: 11641271
  49. Ups and downs of tissue and planar polarity in plants.
    Bioessays. 2004 Jul;26(7):719-29 PMID: 15221854
  50. Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 1994 Jul 5;91(14):6649-53 PMID: 8022831
  51. Two anthranilate synthase genes in Arabidopsis: defense-related regulation of the tryptophan pathway.
    Plant Cell. 1992 Jun;4(6):721-33 PMID: 1392592
  52. Arabidopsis cytochrome P450 cyp83B1 mutations activate the tryptophan biosynthetic pathway.
    Genetics. 2002 Jan;160(1):323-32 PMID: 11805067
  53. Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects.
    Plant Cell. 1997 May;9(5):745-57 PMID: 9165751
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2005-04-00
Epub
2005-00-16
Pages
1090-104
Language
English
Region
England
NLM ID
9208688
PMCID
PMC1087988
Subset
IM
Grants
NIGMS NIH HHS · R01 GM043644 · United States
NIGMS NIH HHS · GM-43644 · United States
Databases
RefSeq
NM_120158, NM_127798
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]