Home LiteratureArticle Details
PMID: 15879558 Published · ppublish English Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

The glucocorticoid receptor blocks P-TEFb recruitment by NFkappaB to effect promoter-specific transcriptional repression.

Genes & development ·Vol. 19 ·No. 9 ·2005-05-01 ·Pages 1116-27

Luecke HF, Yamamoto KR

Abstract

To investigate the determinants of promoter-specific gene regulation by the glucocorticoid receptor (GR), we compared the composition and function of regulatory complexes at two NFkappaB-responsive genes that are differentially regulated by GR. Transcription of the IL-8 and IkappaBalpha genes is stimulated by TNFalpha in A549 cells, but GR selectively represses IL-8 mRNA synthesis by inhibiting Ser2 phosphorylation of the RNA polymerase II (pol II) C-terminal domain (CTD). The proximal kappaB elements at these genes differ in sequence by a single base pair, and both recruited RelA and p50. Surprisingly, GR was recruited to both of these elements, despite the fact that GR failed to repress the IkappaBalpha promoter. Rather, the regulatory complexes formed at IL-8 and IkappaBalpha were distinguished by differential recruitment of the Ser2 CTD kinase, P-TEFb. Disruption of P-TEFb function by the Cdk-inhibitor, DRB, or by small interfering RNA selectively blocked TNFalpha stimulation of IL-8 mRNA production. GR competed with P-TEFb recruitment to the IL-8 promoter. Strikingly, IL-8 mRNA synthesis was repressed by GR at a post-initiation step, demonstrating that promoter proximal regulatory sequences assemble complexes that impact early and late stages of mRNA synthesis. Thus, GR accomplishes selective repression by targeting promoter-specific components of NFkappaB regulatory complexes.

MeSH Terms
Chromatin Immunoprecipitation Dichlororibofuranosylbenzimidazole/pharmacology Gene Expression Regulation Glutathione Transferase/metabolism Humans I-kappa B Proteins/genetics Interleukin-8/genetics Models, Biological NF-KappaB Inhibitor alpha NF-kappa B/metabolism Oligonucleotides Phosphorylation Positive Transcriptional Elongation Factor B/antagonists & inhibitors,metabolism Promoter Regions, Genetic/genetics RNA Polymerase II/antagonists & inhibitors,metabolism RNA, Small Interfering/pharmacology Receptors, Glucocorticoid/metabolism Reverse Transcriptase Polymerase Chain Reaction Transcription, Genetic/drug effects Tumor Cells, Cultured Tumor Necrosis Factor-alpha/metabolism
Chemicals
I-kappa B Proteins Interleukin-8 NF-kappa B NFKBIA protein, human Oligonucleotides RNA, Small Interfering Receptors, Glucocorticoid Tumor Necrosis Factor-alpha NF-KappaB Inhibitor alpha Dichlororibofuranosylbenzimidazole Glutathione Transferase Positive Transcriptional Elongation Factor B RNA Polymerase II
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Luecke Hans F
Department of Cellular and Molecular Pharmacology, University of California-San Francisco, San Francisco, CA 94107-2280, USA.
Yamamoto Keith R
References (57)
57 references, click to expand
  1. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes.
    Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7923-7 PMID: 8367444
  2. Identification by in vivo genomic footprinting of a transcriptional switch containing NF-kappaB and Sp1 that regulates the IkappaBalpha promoter.
    Mol Cell Biol. 1999 Sep;19(9):6140-53 PMID: 10454561
  3. Identification of the rel family members required for virus induction of the human beta interferon gene.
    Mol Cell Biol. 1995 Jan;15(1):152-64 PMID: 7799921
  4. Phosphorylation of the C-terminal domain of RNA polymerase II.
    Biochim Biophys Acta. 1995 Apr 4;1261(2):171-82 PMID: 7711060
  5. Purification of P-TEFb, a transcription factor required for the transition into productive elongation.
    J Biol Chem. 1995 May 26;270(21):12335-8 PMID: 7759473
  6. Different DNA elements can modulate the conformation of thyroid hormone receptor heterodimer and its transcriptional activity.
    J Biol Chem. 1996 Sep 20;271(38):23096-104 PMID: 8798500
  7. Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase.
    J Biol Chem. 1996 Oct 25;271(43):27176-83 PMID: 8900211
  8. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.
    Nature. 1997 Jan 23;385(6614):357-61 PMID: 9002523
  9. Structural flexibility in transcription complex formation revealed by protein-DNA photocrosslinking.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8450-5 PMID: 9237997
  10. 5'-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II.
    Genes Dev. 1997 Dec 15;11(24):3306-18 PMID: 9407024
  11. mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain.
    Genes Dev. 1997 Dec 15;11(24):3319-26 PMID: 9407025
  12. A novel DNA recognition mode by the NF-kappa B p65 homodimer.
    Nat Struct Biol. 1998 Jan;5(1):67-73 PMID: 9437432
  13. Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA.
    Nature. 1998 Jan 22;391(6665):410-3 PMID: 9450761
  14. The I kappa B/NF-kappa B system: a key determinant of mucosalinflammation and protection.
    Am J Physiol Cell Physiol. 2000 Mar;278(3):C451-62 PMID: 10712233
  15. P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II.
    Mol Cell Biol. 2000 Apr;20(8):2629-34 PMID: 10733565
  16. Glucocorticoids repress NF-kappaB-driven genes by disturbing the interaction of p65 with the basal transcription machinery, irrespective of coactivator levels in the cell.
    Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3919-24 PMID: 10760263
  17. p38 MAP kinase activation by Clostridium difficile toxin A mediates monocyte necrosis, IL-8 production, and enteritis.
    J Clin Invest. 2000 Apr;105(8):1147-56 PMID: 10772660
  18. The NFkappaBb/IkappaB system in acute inflammation.
    Arch Immunol Ther Exp (Warsz). 2000;48(2):59-63 PMID: 10807044
  19. Control of elongation by RNA polymerase II.
    Trends Biochem Sci. 2000 Aug;25(8):375-80 PMID: 10916156
  20. Transcriptional activity of positive transcription elongation factor b kinase in vivo requires the C-terminal domain of RNA polymerase II.
    Gene. 2000 Aug 22;254(1-2):139-45 PMID: 10974544
  21. The glucocorticoid receptor inhibits NFkappaB by interfering with serine-2 phosphorylation of the RNA polymerase II carboxy-terminal domain.
    Genes Dev. 2000 Sep 15;14(18):2314-29 PMID: 10995388
  22. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription.
    Genes Dev. 2000 Oct 1;14(19):2452-60 PMID: 11018013
  23. High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation.
    Genes Dev. 2000 Oct 15;14(20):2635-49 PMID: 11040217
  24. Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):445-50 PMID: 11149954
  25. Innate immunity and inflammation: a transcriptional paradigm.
    Immunol Res. 2001;23(2-3):99-109 PMID: 11444396
  26. Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD.
    Genes Dev. 2001 Jul 15;15(14):1783-95 PMID: 11459828
  27. Kaurane diterpenes from Isodon japonicus inhibit nitric oxide and prostaglandin E2 production and NF-kappaB activation in LPS-stimulated macrophage RAW264.7 cells.
    Planta Med. 2001 Jul;67(5):406-10 PMID: 11488452
  28. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo.
    J Biol Chem. 2001 Aug 24;276(34):31793-9 PMID: 11431468
  29. NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.
    Mol Cell. 2001 Aug;8(2):327-37 PMID: 11545735
  30. Control of RNA polymerase II activity by dedicated CTD kinases and phosphatases.
    Front Biosci. 2001 Oct 1;6:D1358-68 PMID: 11578967
  31. Factor recruitment and TIF2/GRIP1 corepressor activity at a collagenase-3 response element that mediates regulation by phorbol esters and hormones.
    EMBO J. 2001 Nov 1;20(21):6071-83 PMID: 11689447
  32. c-Myc mediates activation of the cad promoter via a post-RNA polymerase II recruitment mechanism.
    J Biol Chem. 2001 Dec 21;276(51):48562-71 PMID: 11673469
  33. Stimulatory effect of splicing factors on transcriptional elongation.
    Nature. 2001 Dec 20-27;414(6866):929-33 PMID: 11780068
  34. Kaurane diterpene, kamebakaurin, inhibits NF-kappa B by directly targeting the DNA-binding activity of p50 and blocks the expression of antiapoptotic NF-kappa B target genes.
    J Biol Chem. 2002 May 24;277(21):18411-20 PMID: 11877450
  35. Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes.
    Genes Dev. 2002 Sep 1;16(17):2219-24 PMID: 12208844
  36. Myc recruits P-TEFb to mediate the final step in the transcriptional activation of the cad promoter.
    J Biol Chem. 2002 Oct 18;277(42):40156-62 PMID: 12177005
  37. The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation.
    Science. 2002 Nov 8;298(5596):1241-5 PMID: 12424381
  38. Transcriptional and post-transcriptional control of gene expression in inflammation.
    Cytokine. 2002 Nov 7;20(3):91-106 PMID: 12453467
  39. The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila.
    Nature. 2002 Dec 19-26;420(6917):837-41 PMID: 12490954
  40. Alternate surfaces of transcriptional coregulator GRIP1 function in different glucocorticoid receptor activation and repression contexts.
    Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16701-6 PMID: 12481024
  41. The C-terminal domain of pol II and a DRB-sensitive kinase are required for 3' processing of U2 snRNA.
    EMBO J. 2003 Feb 17;22(4):925-34 PMID: 12574128
  42. Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation.
    Eur J Biochem. 2003 Oct;270(19):3859-70 PMID: 14511368
  43. Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes.
    Mol Cell. 2004 Jan 16;13(1):55-65 PMID: 14731394
  44. Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing.
    Mol Cell. 2004 Jan 16;13(1):67-76 PMID: 14731395
  45. Evidence for conformational flexibility in the Tat-TAR recognition motif of cyclin T1.
    Virology. 2004 Jan 5;318(1):306-17 PMID: 14972556
  46. Cellular control of gene expression by T-type cyclin/CDK9 complexes.
    Gene. 2004 Aug 4;337:15-23 PMID: 15276198
  47. One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers.
    Cell. 2004 Aug 20;118(4):453-64 PMID: 15315758
  48. Multiple links between transcription and splicing.
    RNA. 2004 Oct;10(10):1489-98 PMID: 15383674
  49. DNA binding-induced conformational change of the yeast transcriptional activator PRTF.
    Cell. 1990 Jul 27;62(2):367-77 PMID: 2164891
  50. Postinitiation transcriptional control in Drosophila melanogaster.
    Mol Cell Biol. 1990 Nov;10(11):6041-5 PMID: 2172790
  51. Regulatory crosstalk at composite response elements.
    Trends Biochem Sci. 1991 Nov;16(11):423-6 PMID: 1776172
  52. The guanylyltransferase domain of mammalian mRNA capping enzyme binds to the phosphorylated carboxyl-terminal domain of RNA polymerase II.
    J Biol Chem. 1998 Apr 17;273(16):9577-85 PMID: 9545288
  53. Allosteric effects of DNA on transcriptional regulators.
    Nature. 1998 Apr 30;392(6679):885-8 PMID: 9582068
  54. Identification of a cyclin subunit required for the function of Drosophila P-TEFb.
    J Biol Chem. 1998 May 29;273(22):13855-60 PMID: 9593731
  55. Allosteric interactions between capping enzyme subunits and the RNA polymerase II carboxy-terminal domain.
    Genes Dev. 1998 Nov 15;12(22):3482-7 PMID: 9832501
  56. Building transcriptional regulatory complexes: signals and surfaces.
    Cold Spring Harb Symp Quant Biol. 1998;63:587-98 PMID: 10384324
  57. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation.
    Nature. 1994 Jul 7;370(6484):75-7 PMID: 8015613
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
2005-05-01
Pages
1116-27
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC1091745
Subset
IM
Grants
NCI NIH HHS · R01 CA020535 · United States
NCI NIH HHS · R01 CA 20535 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]