Home LiteratureArticle Details
PMID: 1592810 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.

Journal of bacteriology ·Vol. 174 ·No. 11 ·1992-06-00 ·Pages 3558-60

Herman ND, Schneider TD

Abstract

The 12 incD repeats in the F plasmid each contain about 60 bits of information, which is three times the amount of conservation that a single protein would need to distinguish the repeats from the rest of the Escherichia coli genome. This is the first reported discovery of a case of threefold excess information, and it implies that at least three proteins bind independently to the repeats. In support of this observation, other workers have shown that three polypeptides bind to this region, but only one, SopB, is known to bind independently of other factors. Identification of the other two proteins should help us to understand the mechanism of plasmid partitioning during cell division.

Related Genes
MeSH Terms
Base Sequence Escherichia coli/genetics Molecular Sequence Data Plasmids/genetics Regulatory Sequences, Nucleic Acid/genetics Repetitive Sequences, Nucleic Acid/genetics
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Herman N D
Laboratory of Mathematical Biology, National Cancer Institute, Frederick Cancer Research and Development Center, Maryland 21702-1201.
Schneider T D
References (26)
26 references, click to expand
  1. Analysis of the F plasmid centromere.
    Mol Gen Genet. 1987 May;207(2-3):406-12 PMID: 3039298
  2. Possible involvement of the ugpA gene product in the stable maintenance of mini-F plasmid in Escherichia coli.
    Mol Gen Genet. 1990 Sep;223(3):361-8 PMID: 2270076
  3. Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli.
    J Bacteriol. 1988 Sep;170(9):3967-77 PMID: 2842295
  4. Partitioning of the F plasmid: overproduction of an essential protein for partition inhibits plasmid maintenance.
    Mol Gen Genet. 1987 Jul;208(3):365-72 PMID: 2823057
  5. Structure and function of the F plasmid genes essential for partitioning.
    J Mol Biol. 1986 Nov 5;192(1):1-15 PMID: 3029390
  6. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.
    Cell. 1987 Jul 31;50(3):495-508 PMID: 3038334
  7. Chromosomal genes essential for stable maintenance of the mini-F plasmid in Escherichia coli.
    J Bacteriol. 1988 Nov;170(11):5272-8 PMID: 3053654
  8. Nucleotide sequence of the ugp genes of Escherichia coli K-12: homology to the maltose system.
    Mol Microbiol. 1988 Nov;2(6):767-75 PMID: 3062310
  9. Plasmid partition.
    Plasmid. 1988 Jul;20(1):1-9 PMID: 3071816
  10. Mechanisms that contribute to the stable segregation of plasmids.
    Annu Rev Genet. 1989;23:37-69 PMID: 2694936
  11. Purification and characterization of the sopB gene product which is responsible for stable maintenance of mini-F plasmid.
    Mol Gen Genet. 1989 Sep;218(3):431-6 PMID: 2685542
  12. Purification and characterization of SopA and SopB proteins essential for F plasmid partitioning.
    J Biol Chem. 1989 Sep 15;264(26):15535-41 PMID: 2670941
  13. Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.
    Nucleic Acids Res. 1989 Jan 25;17(2):659-74 PMID: 2915926
  14. Twelve 43-base-pair repeats map in a cis-acting region essential for partition of plasmid mini-F.
    J Bacteriol. 1986 Mar;165(3):1043-5 PMID: 3949712
  15. Mini-F protein that binds to a unique region for partition of mini-F plasmid DNA.
    J Bacteriol. 1985 Jul;163(1):349-54 PMID: 3891736
  16. A locus affecting nucleoid segregation in Salmonella typhimurium.
    J Bacteriol. 1990 Sep;172(9):5416-24 PMID: 2203751
  17. The human genome project: past, present, and future.
    Science. 1990 Apr 6;248(4951):44-9 PMID: 2181665
  18. Partition-mediated incompatibility of bacterial plasmids.
    Cell. 1990 Feb 9;60(3):351-4 PMID: 2406018
  19. Human DNA TATA boxes and transcription initiation sites. A statistical study.
    J Mol Biol. 1990 May 5;213(1):37-52 PMID: 2338714
  20. Partition mechanism of F plasmid: two plasmid gene-encoded products and a cis-acting region are involved in partition.
    Cell. 1983 Feb;32(2):351-60 PMID: 6297791
  21. Delila system tools.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):129-40 PMID: 6694897
  22. A design for computer nucleic-acid-sequence storage, retrieval, and manipulation.
    Nucleic Acids Res. 1982 May 11;10(9):3013-24 PMID: 7099972
  23. Sequence logos: a new way to display consensus sequences.
    Nucleic Acids Res. 1990 Oct 25;18(20):6097-100 PMID: 2172928
  24. Theory of molecular machines. I. Channel capacity of molecular machines.
    J Theor Biol. 1991 Jan 7;148(1):83-123 PMID: 2016886
  25. New topoisomerase essential for chromosome segregation in E. coli.
    Cell. 1990 Oct 19;63(2):393-404 PMID: 2170028
  26. Information content of binding sites on nucleotide sequences.
    J Mol Biol. 1986 Apr 5;188(3):415-31 PMID: 3525846
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1992-06-00
Pages
3558-60
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC206041
Subset
IM
Databases
GENBANK
M79367, M79368, M79369, M79370, M79371, M79372, M81963, M87491, M87492, X04619, X13141
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]