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PMID: 16000176 Published · epublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.

BMC microbiology ·Vol. 5 ·2005-07-06 ·Pages 41

Afkar E, Reguera G, Schiffer M, Lovley DR

Abstract

Metal reduction is thought to take place at or near the bacterial outer membrane and, thus, outer membrane proteins in the model dissimilatory metal-reducing organism Geobacter sulfurreducens are of interest to understand the mechanisms of Fe(III) reduction in the Geobacter species that are the predominant Fe(III) reducers in many environments. Previous studies have implicated periplasmic and outer membrane cytochromes in electron transfer to metals. Here we show that the most abundant outer membrane protein of G. sulfurreducens, OmpJ, is not a cytochrome yet it is required for metal respiration. When outer membrane proteins of G. sulfurreducens were separated via SDS-PAGE, one protein, designated OmpJ (outer membrane protein J), was particularly abundant. The encoding gene, which was identified from mass spectrometry analysis of peptide fragments, is present in other Geobacteraceae, but not in organisms outside this family. The predicted localization and structure of the OmpJ protein suggested that it was a porin. Deletion of the ompJ gene in G. sulfurreducens produced a strain that grew as well as the wild-type strain with fumarate as the electron acceptor but could not grow with metals, such as soluble or insoluble Fe(III) and insoluble Mn(IV) oxide, as the electron acceptor. The heme c content in the mutant strain was ca. 50% of the wild-type and there was a widespread loss of multiple cytochromes from soluble and membrane fractions. Transmission electron microscopy analyses of mutant cells revealed an unusually enlarged periplasm, which is likely to trigger extracytoplasmic stress response mechanisms leading to the degradation of periplasmic and/or outer membrane proteins, such as cytochromes, required for metal reduction. Thus, the loss of the capacity for extracellular electron transport in the mutant could be due to the missing c-type cytochromes, or some more direct, but as yet unknown, role of OmpJ in metal reduction. OmpJ is a putative porin found in the outer membrane of the model metal reducer G. sulfurreducens that is required for respiration of extracellular electron acceptors such as soluble and insoluble metals. The effect of OmpJ in extracellular electron transfer is indirect, as OmpJ is required to keep the integrity of the periplasmic space necessary for proper folding and functioning of periplasmic and outer membrane electron transport components. The exclusive presence of ompJ in members of the Geobacteraceae family as well as its role in metal reduction suggest that the ompJ sequence may be useful in tracking the growth or activity of Geobacteraceae in sedimentary environments.

MeSH Terms
Amino Acid Sequence Bacterial Outer Membrane Proteins/chemistry,genetics,metabolism Base Sequence Biological Transport DNA Primers Deltaproteobacteria/genetics,metabolism Ferric Compounds/metabolism Gene Deletion Genome, Bacterial Geobacter/classification,genetics,immunology Manganese Compounds/metabolism Molecular Sequence Data Oxides/metabolism Peptide Fragments/chemistry Phylogeny Protein Structure, Secondary Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Chemicals
Bacterial Outer Membrane Proteins DNA Primers Ferric Compounds Manganese Compounds Oxides Peptide Fragments ferric oxide manganese oxide
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Afkar Eman
Department of Microbiology, University of Massachusetts, Amherst, Massachusetts 01003, USA. [email protected]
Reguera Gemma
Schiffer Marianne
Lovley Derek R
References (44)
44 references, click to expand
  1. Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.
    J Bacteriol. 2006 Jan;188(2):450-5 PMID: 16385034
  2. Cleaning up with genomics: applying molecular biology to bioremediation.
    Nat Rev Microbiol. 2003 Oct;1(1):35-44 PMID: 15040178
  3. MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.
    J Bacteriol. 2004 Jun;186(12):4042-5 PMID: 15175321
  4. Molecular basis of bacterial outer membrane permeability revisited.
    Microbiol Mol Biol Rev. 2003 Dec;67(4):593-656 PMID: 14665678
  5. Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens.
    Appl Environ Microbiol. 2000 May;66(5):2248-51 PMID: 10788411
  6. Quality control in the bacterial periplasm.
    Biochim Biophys Acta. 2004 Nov 11;1694(1-3):121-34 PMID: 15546662
  7. OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.
    J Bacteriol. 2003 Apr;185(7):2096-103 PMID: 12644478
  8. PCR-mediated gene replacement in Escherichia coli.
    Gene. 2000 Apr 4;246(1-2):321-30 PMID: 10767554
  9. Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens.
    Appl Environ Microbiol. 2004 Sep;70(9):5183-9 PMID: 15345398
  10. Dissimilatory Fe(III) and Mn(IV) reduction.
    Adv Microb Physiol. 2004;49:219-86 PMID: 15518832
  11. Isolation of outer membranes.
    Methods Enzymol. 1994;235:225-34 PMID: 8057896
  12. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.
    Anal Chem. 1999 Jul 15;71(14):2871-82 PMID: 10424174
  13. Measurement of protein using bicinchoninic acid.
    Anal Biochem. 1985 Oct;150(1):76-85 PMID: 3843705
  14. Surface exposure and protease insensitivity of Borrelia burgdorferi Erp (OspEF-related) lipoproteins.
    Microbiology. 2001 Apr;147(Pt 4):821-30 PMID: 11283278
  15. Extracellular electron transfer via microbial nanowires.
    Nature. 2005 Jun 23;435(7045):1098-101 PMID: 15973408
  16. Organic matter mineralization with reduction of ferric iron in anaerobic sediments.
    Appl Environ Microbiol. 1986 Apr;51(4):683-9 PMID: 16347032
  17. MtrB is required for proper incorporation of the cytochromes OmcA and OmcB into the outer membrane of Shewanella putrefaciens MR-1.
    Appl Environ Microbiol. 2002 Nov;68(11):5585-94 PMID: 12406753
  18. In situ expression of nifD in Geobacteraceae in subsurface sediments.
    Appl Environ Microbiol. 2004 Dec;70(12):7251-9 PMID: 15574924
  19. The outer membrane of Gram-negative bacteria.
    Adv Microb Physiol. 1979;20:163-250 PMID: 394591
  20. Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis.
    Nature. 2002 Apr 18;416(6882):767-9 PMID: 11961561
  21. The structure of bacterial outer membrane proteins.
    Biochim Biophys Acta. 2002 Oct 11;1565(2):308-17 PMID: 12409203
  22. Structure and function of bacterial outer membrane proteins: barrels in a nutshell.
    Mol Microbiol. 2000 Jul;37(2):239-53 PMID: 10931321
  23. Enhanced genome annotation using structural profiles in the program 3D-PSSM.
    J Mol Biol. 2000 Jun 2;299(2):499-520 PMID: 10860755
  24. Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater.
    Appl Environ Microbiol. 2004 May;70(5):3091-5 PMID: 15128571
  25. Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria.
    Microbiology. 2001 Aug;147(Pt 8):2065-75 PMID: 11495985
  26. Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.
    Appl Environ Microbiol. 2003 Oct;69(10):5884-91 PMID: 14532040
  27. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.
    Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1591-9 PMID: 15388715
  28. Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans.
    Appl Environ Microbiol. 2002 May;68(5):2294-9 PMID: 11976100
  29. A role for excreted quinones in extracellular electron transfer.
    Nature. 2000 May 4;405(6782):94-7 PMID: 10811225
  30. Pore-forming molecules in gram-negative anaerobic bacteria.
    Clin Infect Dis. 1997 Sep;25 Suppl 2:S284-6 PMID: 9310708
  31. The outer membrane protein Omp35 affects the reduction of Fe(III), nitrate, and fumarate by Shewanella oneidensis MR-1.
    BMC Microbiol. 2004 Jun 22;4:23 PMID: 15212692
  32. Specific indication of hemoproteins in polyacrylamide gels using a double-staining process.
    Anal Biochem. 1984 Feb;136(2):509-14 PMID: 6202169
  33. Crystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease.
    Cell. 2004 May 14;117(4):483-94 PMID: 15137941
  34. Fe(III) and S0 reduction by Pelobacter carbinolicus.
    Appl Environ Microbiol. 1995 Jun;61(6):2132-8 PMID: 7793935
  35. Permeation of hydrophilic solutes through mitochondrial outer membranes: review on mitochondrial porins.
    Biochim Biophys Acta. 1994 Jun 29;1197(2):167-96 PMID: 8031826
  36. Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments.
    Environ Microbiol. 2002 Sep;4(9):510-6 PMID: 12220407
  37. Development of a genetic system for Geobacter sulfurreducens.
    Appl Environ Microbiol. 2001 Jul;67(7):3180-7 PMID: 11425739
  38. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes.
    Gene. 1995 Dec 1;166(1):175-6 PMID: 8529885
  39. Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.
    Biochem J. 2003 Jan 1;369(Pt 1):153-61 PMID: 12356333
  40. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.
    Appl Environ Microbiol. 1994 Oct;60(10):3752-9 PMID: 7527204
  41. An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels.
    Anal Biochem. 1976 Sep;75(1):168-76 PMID: 822747
  42. Characterization of a membrane-bound NADH-dependent Fe(3+) reductase from the dissimilatory Fe(3+)-reducing bacterium Geobacter sulfurreducens.
    FEMS Microbiol Lett. 2000 Apr 15;185(2):205-11 PMID: 10754249
  43. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.
    Science. 2003 Dec 12;302(5652):1967-9 PMID: 14671304
  44. Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra.
    Anal Biochem. 1987 Feb 15;161(1):1-15 PMID: 3578775
Article Info
Journal
BMC microbiology
Abbr.
BMC Microbiol
ISSN
1471-2180
Published
2005-07-06
Epub
2005-00-06
Pages
41
Language
English
Region
England
NLM ID
100966981
PMCID
PMC1186022
Subset
IM
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