Home LiteratureArticle Details
PMID: 16593576 Published · ppublish English Journal Article

Nodulin-24 gene of soybean codes for a peptide of the peribacteroid membrane and was generated by tandem duplication of a sequence resembling an insertion element.

Katinakis P, Verma DP

Abstract

A nodulin gene coding for a polypeptide with an apparent M(r) of 24,000 (nodulin-24) was isolated from soybean (Glycine max). DNA sequence analysis of this gene revealed that its coding capacity is for a polypeptide of only M(r) 15,100 and is interrupted by four introns. The three middle exons and their flanking segments appear to have been generated by duplications of a unit resembling an insertion sequence. This unit is bounded by a 12-base-pair inverted repeat and encompasses the 54-base-pair exon corresponding to each of three central hydrophobic domains of the protein, nodulin-24. The resulting repeated hydrophobic structure of this protein may be responsible for an apparent increase in M(r) from 15,100 to 24,000. In vitro translation and immunological studies suggest that nodulin-24 is a precursor and is processed cotranslationally into a M(r) 20,000 polypeptide. This polypeptide is a component of the membrane envelope enclosing the bacteroids (peribacteroid membrane) synthesized during symbiosis with Rhizobium. The low degree (<6%) of sequence divergence among the repeated units suggests that this gene has been generated recently during the evolution of symbiotic nitrogen fixation in soybean.

Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Katinakis P
Plant Molecular Biology Laboratory, Department of Biology, McGill University, Montreal, PQ, Canada H3A 1B1.
Verma D P
References (38)
38 references, click to expand
  1. Isolation and characterization of the membrane envelope enclosing the bacteroids in soybean root nodules.
    J Cell Biol. 1978 Sep;78(3):919-36 PMID: 151688
  2. Soybean nodulin genes: Analysis of cDNA clones reveals several major tissue-specific sequences in nitrogen-fixing root nodules.
    Proc Natl Acad Sci U S A. 1983 May;80(9):2594-8 PMID: 16593308
  3. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  4. Post-translational cleavage of presecretory proteins with an extract of rough microsomes from dog pancreas containing signal peptidase activity.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5598-602 PMID: 271987
  5. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  6. Screening lambdagt recombinant clones by hybridization to single plaques in situ.
    Science. 1977 Apr 8;196(4286):180-2 PMID: 322279
  7. Why genes in pieces?
    Nature. 1978 Feb 9;271(5645):501 PMID: 622185
  8. The isolation of structural genes from libraries of eucaryotic DNA.
    Cell. 1978 Oct;15(2):687-701 PMID: 719759
  9. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  10. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  11. Isolation and in vitro translation of soybean leghaemoglobin mRNA.
    Nature. 1974 Sep 6;251(5470):74-7 PMID: 4414006
  12. Intragenic amplification and divergence in the mouse alpha-fetoprotein gene.
    Nature. 1981 Dec 24;294(5843):713-8 PMID: 6172714
  13. Alternative RNA splicing of the murine alpha A-crystallin gene: protein-coding information within an intron.
    Cell. 1983 Mar;32(3):707-12 PMID: 6187470
  14. The pathway of eukaryotic mRNA formation.
    Annu Rev Biochem. 1983;52:441-66 PMID: 6193753
  15. Isolation, sequence analysis, and intron-exon arrangement of the gene encoding bovine rhodopsin.
    Cell. 1983 Oct;34(3):807-14 PMID: 6194890
  16. DNA rearrangements associated with a transposable element in yeast.
    Cell. 1980 Aug;21(1):239-49 PMID: 6250713
  17. Transposable elements in prokaryotes.
    Annu Rev Genet. 1981;15:341-404 PMID: 6279020
  18. Structure and flanking regions of soybean seed protein genes.
    Cell. 1982 Jun;29(2):651-60 PMID: 6288266
  19. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  20. Structure of the plasmodium knowlesi gene coding for the circumsporozoite protein.
    Cell. 1983 Oct;34(3):815-22 PMID: 6313209
  21. The receptor for transepithelial transport of IgA and IgM contains multiple immunoglobulin-like domains.
    Nature. 1984 Mar 1-7;308(5954):37-43 PMID: 6322002
  22. An unusual 5' splice sequence is efficiently utilized in vivo.
    Proc Natl Acad Sci U S A. 1984 May;81(9):2733-7 PMID: 6326141
  23. Expandable var1 gene of yeast mitochondrial DNA: in-frame insertions can explain the strain-specific protein size polymorphisms.
    Proc Natl Acad Sci U S A. 1984 May;81(10):3148-52 PMID: 6328501
  24. Complete primary structure of a heterodimeric T-cell receptor deduced from cDNA sequences.
    Nature. 1984 Jun 28-Jul 4;309(5971):757-62 PMID: 6330561
  25. The evolution of a plant globin gene family.
    J Mol Evol. 1984;21(1):19-32 PMID: 6442356
  26. Rapid similarity searches of nucleic acid and protein data banks.
    Proc Natl Acad Sci U S A. 1983 Feb;80(3):726-30 PMID: 6572363
  27. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  28. Enhanced graphic matrix analysis of nucleic acid and protein sequences.
    Proc Natl Acad Sci U S A. 1981 Dec;78(12):7665-9 PMID: 6801656
  29. Gene and protein structure of a beta-crystallin polypeptide in murine lens: relationship of exons and structural motifs.
    Nature. 1983 Mar 24-30;302(5906):310-5 PMID: 6835368
  30. Exon duplication and divergence in the human preproglucagon gene.
    Nature. 1983 Jul 28-Aug 3;304(5924):368-71 PMID: 6877358
  31. A catalogue of splice junction sequences.
    Nucleic Acids Res. 1982 Jan 22;10(2):459-72 PMID: 7063411
  32. A simple method for displaying the hydropathic character of a protein.
    J Mol Biol. 1982 May 5;157(1):105-32 PMID: 7108955
  33. Correlation of DNA exonic regions with protein structural units in haemoglobin.
    Nature. 1981 May 7;291(5810):90-2 PMID: 7231530
  34. Periodic correlations in DNA sequences and evidence suggesting their evolutionary origin in a comma-less genetic code.
    J Mol Evol. 1981;17(2):94-102 PMID: 7253039
  35. Identification of "nodule-specific" host proteins (nodoulins) involved in the development of rhizobium-legume symbiosis.
    Cell. 1980 May;20(1):153-63 PMID: 7388942
  36. The primary structure of the duck alpha D-globin gene: an unusual 5' splice junction sequence.
    EMBO J. 1983;2(8):1339-43 PMID: 10872328
  37. Nodulin-35: a subunit of specific uricase (uricase II) induced and localized in the uninfected cells of soybean nodules.
    EMBO J. 1983;2(12):2333-9 PMID: 16453488
  38. The organization of a nuclear DNA sequence from a higher plant: molecular cloning and characterization of soybean ribosomal DNA.
    Gene. 1979 Nov;7(3-4):317-34 PMID: 160361
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1985-06-00
Pages
4157-61
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC397954
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]