Home LiteratureArticle Details
PMID: 16663896 Published · ppublish English Journal Article

Methylation Pattern of Radish (Raphanus sativus) Nuclear Ribosomal RNA Genes.

Plant physiology ·Vol. 76 ·No. 3 ·1984-11-00 ·Pages 627-32

Delseny M, Laroche M, Penon P

Abstract

The methylation pattern of radish Raphanus sativus nuclear rDNA has been investigated using the Hpa II, Msp I, and Hha I restriction enzymes. The presence of numerous target sites for these enzymes has been shown using cloned rDNA fragments. A large fraction of the numerous rDNA units are heavily methylated, being completely resistant to Hpa II and Hpa I. However, specific sites are constantly available in another fraction of the units and are therefore unmethylated. The use of different probes allowed us to demonstrate that hypomethylated sites are present in different regions. Major hypomethylated Hha I sites have been mapped in the 5' portion of 25S rRNA coding sequence. Among the hypomethylated fraction, different methylation patterns coexist. It has been possible to demonstrate that methylation patterns are specific for particular units. The Hha I pattern of rDNA in tissues of different developmental stages was analyzed. Evidence for possible tissue specific differences in the methylation pattern is reported.

Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Delseny M
Laboratoire de Physiologie Végétale, E.R.A. No. 226 du CNRS, Universite de Perpignan, 66025 Perpignan-Cedex, France.
Laroche M
Penon P
References (24)
24 references, click to expand
  1. Effect of CpG methylation on Msp I.
    Nucleic Acids Res. 1983 Jun 11;11(11):3571-80 PMID: 6190136
  2. The sequence GGCmCGG is resistant to MspI cleavage.
    Nucleic Acids Res. 1983 Jun 11;11(11):3559-69 PMID: 6190135
  3. EK2 derivatives of bacteriophage lambda useful in the cloning of DNA from higher organisms: the lambdagtWES system.
    Science. 1977 Apr 8;196(4286):175-7 PMID: 322278
  4. Variable patterns of total DNA and rDNA methylation in animals.
    Nucleic Acids Res. 1980 Apr 11;8(7):1485-97 PMID: 6253937
  5. Loss of rDNA methylation accompanies the onset of ribosomal gene activity in early development of X. laevis.
    Cell. 1981 Nov;26(3 Pt 1):381-90 PMID: 6276014
  6. Characterisation of the genes for ribosomal RNA in flax.
    Nucleic Acids Res. 1981 Mar 25;9(6):1301-9 PMID: 6262724
  7. 5-Methylcytosine in eukaryotic DNA.
    Science. 1981 Jun 19;212(4501):1350-7 PMID: 6262918
  8. Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other insects.
    Nucleic Acids Res. 1979 Jul 11;6(9):2987-95 PMID: 493131
  9. Differential labelling of DNA in higher plants.
    Biochem Biophys Res Commun. 1972 Aug 7;48(3):578-84 PMID: 5047689
  10. Cloning and characterization of ribosomal RNA genes from wheat and barley.
    Nucleic Acids Res. 1979 Dec 11;7(7):1869-85 PMID: 537913
  11. Variable methylation of the ribosomal RNA genes of the rat.
    Nucleic Acids Res. 1982 Jul 10;10(13):3877-92 PMID: 7111024
  12. The inheritance of methylation patterns in vertebrates.
    Cell. 1981 May;24(2):285-6 PMID: 7195315
  13. DNA methylation and gene function.
    Science. 1980 Nov 7;210(4470):604-10 PMID: 6254144
  14. Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis.
    J Mol Biol. 1978 Jan 5;118(1):27-47 PMID: 625056
  15. Two adjacent genomic zein sequences: structure, organization and tissue-specific restriction pattern.
    J Mol Biol. 1983 Oct 5;169(4):799-811 PMID: 6313935
  16. Sequence specificity of methylation in higher plant DNA.
    Nature. 1981 Aug 27;292(5826):860-2 PMID: 6267477
  17. Heterogeneity of pumpkin ribosomal DNA.
    Plant Physiol. 1983 May;72(1):166-71 PMID: 16662953
  18. Organisation of the 5S RNA genes in flax.
    Nucleic Acids Res. 1981 Nov 25;9(22):5895-904 PMID: 6171777
  19. Sequence arrangement of a highly methylated satellite DNA of a plant, Scilla: A tandemly repeated inverted repeat.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):338-42 PMID: 16592953
  20. Methylated and unmethylated ribosomal RNA genes in the mouse.
    J Mol Biol. 1981 Oct 15;152(1):1-17 PMID: 6279862
  21. Methylated and unmethylated DNA compartments in the sea urchin genome.
    Cell. 1979 Aug;17(4):889-901 PMID: 487434
  22. The effect of site specific methylation on restriction endonuclease cleavage (update).
    Nucleic Acids Res. 1983 Jan 11;11(1):r169-73 PMID: 6306558
  23. DNAase I sensitivity and methylation of active versus inactive rRNA genes in xenopus species hybrids.
    Cell. 1982 May;29(1):211-8 PMID: 6286140
  24. Transcription and methylation of flax rDNA.
    Nucleic Acids Res. 1983 May 25;11(10):3047-64 PMID: 6304619
Article Info
Journal
Plant physiology
Abbr.
Plant Physiol
ISSN
0032-0889
Published
1984-11-00
Pages
627-32
Language
English
Region
United States
NLM ID
0401224
PMCID
PMC1064345
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]