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PMID: 16884525 Published · ppublish English Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Primate-specific evolution of an LDLR enhancer.

Genome biology ·Vol. 7 ·No. 8 ·2006-00-00 ·Pages R68

Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D

Abstract

Sequence changes in regulatory regions have often been invoked to explain phenotypic divergence among species, but molecular examples of this have been difficult to obtain. In this study we identified an anthropoid primate-specific sequence element that contributed to the regulatory evolution of the low-density lipoprotein receptor. Using a combination of close and distant species genomic sequence comparisons coupled with in vivo and in vitro studies, we found that a functional cholesterol-sensing sequence motif arose and was fixed within a pre-existing enhancer in the common ancestor of anthropoid primates. Our study demonstrates one molecular mechanism by which ancestral mammalian regulatory elements can evolve to perform new functions in the primate lineage leading to human.

MeSH Terms
Amino Acid Motifs/genetics Animals Base Sequence Cell Line Chromatin Immunoprecipitation Computational Biology Conserved Sequence/genetics DNA Primers Enhancer Elements, Genetic/genetics Evolution, Molecular Humans Mice Molecular Sequence Data Phylogeny Primates/genetics Receptors, LDL/genetics Sequence Alignment
Chemicals
DNA Primers Receptors, LDL
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Wang Qian-fei
Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA. [email protected]
Prabhakar Shyam
Wang Qianben
Moses Alan M
Chanan Sumita
Brown Myles
Eisen Michael B
Cheng Jan-Fang
Rubin Edward M
Boffelli Dario
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Article Info
Journal
Genome biology
Abbr.
Genome Biol
ISSN
1474-760X
Published
2006-00-00
Epub
2006-00-02
Pages
R68
Language
English
Region
England
NLM ID
100960660
PMCID
PMC1779597
Subset
IM
Grants
NHLBI NIH HHS · T32 HL007279 · United States
NHLBI NIH HHS · U01 HL066681 · United States
PHS HHS · THL007279F · United States
NHLBI NIH HHS · U1HL66681B · United States
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