Abstract
MicroRNAs (miRs) are conserved small non-coding RNAs that negatively regulate gene expression. The miR profiles are markedly altered in cancers and some of them have a causal role in tumorigenesis. Here, we report changes in miR expression profile in hepatocellular carcinomas (HCCs) developed in male Fisher rats-fed folic acid, methionine, and choline-deficient (FMD) diet. Comparison of the miR profile by microarray analysis showed altered expression of some miRs in hepatomas compared to the livers from age-matched rats on the normal diet. While let-7a, miR-21, miR-23, miR-130, miR-190, and miR-17-92 family of genes was upregulated, miR-122, an abundant liver-specific miR, was downregulated in the tumors. The decrease in hepatic miR-122 was a tumor-specific event because it did not occur in the rats switched to the folate and methyl-adequate diet after 36 weeks on deficient diet, which did not lead to hepatocarcinogenesis. miR-122 was also silent in a transplanted rat hepatoma. Extrapolation of this study to human primary HCCs revealed that miR-122 expression was significantly (P = 0.013) reduced in 10 out of 20 tumors compared to the pair-matched control tissues. These findings suggest that the downregulation of miR-122 is associated with hepatocarcinogenesis and could be a potential biomarker for liver cancers.
MeSH Terms
Animals
Carcinoma, Hepatocellular/genetics,metabolism
Choline Deficiency
Diet
Folic Acid Deficiency
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Humans
Liver Neoplasms/genetics,metabolism
Male
Methionine/deficiency
MicroRNAs/genetics,metabolism
Microarray Analysis
Rats
Rats, Inbred F344
Chemicals
MIRN190 microRNA, human
MicroRNAs
Methionine
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Kutay Huban
Department of Molecular and Cellular Biochemistry, Ohio State University, Columbus, Ohio 43210, USA.
Bai Shoumei
Datta Jharna
Motiwala Tasneem
Pogribny Igor
Frankel Wendy
Jacob Samson T
Ghoshal Kalpana
References (21)
21 references, click to expand
-
Role of de novo DNA methyltransferases and methyl CpG-binding proteins in gene silencing in a rat hepatoma.
J Biol Chem. 2002 May 3;277(18):16048-58
PMID: 11844796
-
Identification of tissue-specific microRNAs from mouse.
Curr Biol. 2002 Apr 30;12(9):735-9
PMID: 12007417
-
Suppression of the protein tyrosine phosphatase receptor type O gene (PTPRO) by methylation in hepatocellular carcinomas.
Oncogene. 2003 Sep 25;22(41):6319-31
PMID: 14508512
-
Functional analysis of microRNAs during the retinoic acid-induced neuronal differentiation of human NT2 cells.
Nucleic Acids Res Suppl. 2003;(3):243-4
PMID: 14510471
-
MicroRNAs: genomics, biogenesis, mechanism, and function.
Cell. 2004 Jan 23;116(2):281-97
PMID: 14744438
-
Role of human ribosomal RNA (rRNA) promoter methylation and of methyl-CpG-binding protein MBD2 in the suppression of rRNA gene expression.
J Biol Chem. 2004 Feb 20;279(8):6783-93
PMID: 14610093
-
Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers.
Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2999-3004
PMID: 14973191
-
Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival.
Cancer Res. 2004 Jun 1;64(11):3753-6
PMID: 15172979
-
The functions of animal microRNAs.
Nature. 2004 Sep 16;431(7006):350-5
PMID: 15372042
-
Breaks in genomic DNA and within the p53 gene are associated with hypomethylation in livers of folate/methyl-deficient rats.
Cancer Res. 1995 May 1;55(9):1894-901
PMID: 7794383
-
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha.
EMBO J. 2005 Jan 12;24(1):138-48
PMID: 15565168
-
RAS is regulated by the let-7 microRNA family.
Cell. 2005 Mar 11;120(5):635-47
PMID: 15766527
-
A microRNA polycistron as a potential human oncogene.
Nature. 2005 Jun 9;435(7043):828-33
PMID: 15944707
-
c-Myc-regulated microRNAs modulate E2F1 expression.
Nature. 2005 Jun 9;435(7043):839-43
PMID: 15944709
-
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA.
Science. 2005 Sep 2;309(5740):1577-81
PMID: 16141076
-
Real-time expression profiling of microRNA precursors in human cancer cell lines.
Nucleic Acids Res. 2005;33(17):5394-403
PMID: 16192569
-
microPrimer: the biogenesis and function of microRNA.
Development. 2005 Nov;132(21):4645-52
PMID: 16224044
-
Silencing of microRNAs in vivo with 'antagomirs'.
Nature. 2005 Dec 1;438(7068):685-9
PMID: 16258535
-
A microRNA expression signature of human solid tumors defines cancer gene targets.
Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2257-61
PMID: 16461460
-
MicroRNAs in cell proliferation, cell death, and tumorigenesis.
Br J Cancer. 2006 Mar 27;94(6):776-80
PMID: 16495913
-
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1.
RNA Biol. 2004 Jul;1(2):106-13
PMID: 17179747