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PMID: 17099234 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

WormBase: new content and better access.

Nucleic acids research ·Vol. 35 ·No. Database issue ·2007-01-00 ·Pages D506-10

Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J

Abstract

WormBase (http://wormbase.org), a model organism database for Caenorhabditis elegans and other related nematodes, continues to evolve and expand. Over the past year WormBase has added new data on C.elegans, including data on classical genetics, cell biology and functional genomics; expanded the annotation of closely related nematodes with a new genome browser for Caenorhabditis remanei; and deployed new hardware for stronger performance. Several existing datasets including phenotype descriptions and RNAi experiments have seen a large increase in new content. New datasets such as the C.remanei draft assembly and annotations, the Vancouver Fosmid library and TEC-RED 5' end sites are now available as well. Access to and searching WormBase has become more dependable and flexible via multiple mirror sites and indexing through Google.

MeSH Terms
Animals Caenorhabditis/genetics Caenorhabditis elegans/genetics Databases, Genetic Genes, Helminth Genome, Helminth Genomics Internet Oligonucleotide Array Sequence Analysis Phenotype RNA Interference User-Computer Interface
Authors & Affiliations
34 authors, click to expand affiliations / ORCID
Bieri Tamberlyn
Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA. [email protected]
Blasiar Darin
Ozersky Philip
Antoshechkin Igor
Bastiani Carol
Canaran Payan
Chan Juancarlos
Chen Nansheng
Chen Wen J
Davis Paul
Fiedler Tristan J
Girard Lisa
Han Michael
Harris Todd W
Kishore Ranjana
Lee Raymond
McKay Sheldon
Müller Hans-Michael
Nakamura Cecilia
Petcherski Andrei
Rangarajan Arun
Rogers Anthony
Schindelman Gary
Schwarz Erich M
Spooner Will
Tuli Mary Ann
Van Auken Kimberly
Wang Daniel
Wang Xiaodong
Williams Gary
Durbin Richard
Stein Lincoln D
Sternberg Paul W
Spieth John
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13 references, click to expand
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2007-01-00
Epub
2006-00-11
Pages
D506-10
Language
English
Region
England
NLM ID
0411011
PMCID
PMC1669750
Subset
IM
Grants
Medical Research Council · G0701197 · United Kingdom
NHGRI NIH HHS · P41 HG002223 · United States
NHGRI NIH HHS · P41-HG02223 · United States
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