Home LiteratureArticle Details
PMID: 17398098 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Positive-feedback loops as a flexible biological module.

Current biology : CB ·Vol. 17 ·No. 8 ·2007-04-17 ·Pages 668-77

Ingolia NT, Murray AW

Abstract

Bistability in genetic networks allows cells to remember past events and to make discrete decisions in response to graded signals. Bistable behavior can result from positive feedback, but feedback loops can have other roles in signal transduction as well. We introduced positive feedback into the budding-yeast pheromone response to convert it into a bistable system. In the presence of feedback, transient induction with high pheromone levels caused persistent pathway activation, whereas at lower levels a fraction of cells became persistently active but the rest inactivated completely. We also generated mutations that quantitatively tuned the basal and induced expression levels of the feedback promoter and showed that they qualitatively changed the behavior of the system. Finally, we developed a simple stochastic model of our positive-feedback system and showed the agreement between our simulations and experimental results. The positive-feedback loop can display several different behaviors, including bistability, and can switch between them as a result of simple mutations.

MeSH Terms
Feedback, Physiological Gene Expression Regulation, Fungal Gene Regulatory Networks MAP Kinase Signaling System Mating Factor Peptides/metabolism Saccharomyces cerevisiae/metabolism
Chemicals
Peptides Mating Factor
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Ingolia Nicholas T
Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Murray Andrew W
References (39)
39 references, click to expand
  1. Bacterial persistence as a phenotypic switch.
    Science. 2004 Sep 10;305(5690):1622-5 PMID: 15308767
  2. Phenotypic diversity, population growth, and information in fluctuating environments.
    Science. 2005 Sep 23;309(5743):2075-8 PMID: 16123265
  3. Topology and robustness in the Drosophila segment polarity network.
    PLoS Biol. 2004 Jun;2(6):e123 PMID: 15208707
  4. The logical analysis of continuous, non-linear biochemical control networks.
    J Theor Biol. 1973 Apr;39(1):103-29 PMID: 4741704
  5. G1 cyclins CLN1 and CLN2 repress the mating factor response pathway at Start in the yeast cell cycle.
    Genes Dev. 1994 May 1;8(9):1058-70 PMID: 7926787
  6. Overexpression of the STE4 gene leads to mating response in haploid Saccharomyces cerevisiae.
    Mol Cell Biol. 1990 Jan;10(1):217-22 PMID: 2104659
  7. Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior.
    Chaos. 2001 Mar;11(1):170-179 PMID: 12779451
  8. The interpretation of morphogen gradients.
    Development. 2006 Feb;133(3):385-94 PMID: 16410409
  9. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.
    EMBO J. 2001 May 15;20(10):2528-35 PMID: 11350942
  10. Construction of a genetic toggle switch in Escherichia coli.
    Nature. 2000 Jan 20;403(6767):339-42 PMID: 10659857
  11. Fus3p and Kss1p control G1 arrest in Saccharomyces cerevisiae through a balance of distinct arrest and proliferative functions that operate in parallel with Far1p.
    Genetics. 1999 Mar;151(3):989-1004 PMID: 10049917
  12. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2.
    Nat Cell Biol. 2003 Apr;5(4):346-51 PMID: 12629549
  13. Tuning genetic control through promoter engineering.
    Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12678-83 PMID: 16123130
  14. Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations.
    Cell. 2005 Aug 26;122(4):565-78 PMID: 16122424
  15. Regulated cell-to-cell variation in a cell-fate decision system.
    Nature. 2005 Sep 29;437(7059):699-706 PMID: 16170311
  16. Enhancement of cellular memory by reducing stochastic transitions.
    Nature. 2005 May 12;435(7039):228-32 PMID: 15889097
  17. Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
    Cell. 2003 May 30;113(5):597-607 PMID: 12787501
  18. Hysteresis in a synthetic mammalian gene network.
    Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9517-22 PMID: 15972812
  19. ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.
    Proc Natl Acad Sci U S A. 1957 Jul 15;43(7):553-66 PMID: 16590055
  20. Prediction and measurement of an autoregulatory genetic module.
    Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7714-9 PMID: 12808135
  21. Membrane recruitment of the kinase cascade scaffold protein Ste5 by the Gbetagamma complex underlies activation of the yeast pheromone response pathway.
    Genes Dev. 1998 Sep 1;12(17):2684-97 PMID: 9732267
  22. Origins of extrinsic variability in eukaryotic gene expression.
    Nature. 2006 Feb 16;439(7078):861-4 PMID: 16372021
  23. Rapid isolation of yeast genomic DNA: Bust n' Grab.
    BMC Biotechnol. 2004 Apr 21;4:8 PMID: 15102338
  24. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes.
    Science. 1998 May 8;280(5365):895-8 PMID: 9572732
  25. Multistability in the lactose utilization network of Escherichia coli.
    Nature. 2004 Feb 19;427(6976):737-40 PMID: 14973486
  26. A chemical switch for inhibitor-sensitive alleles of any protein kinase.
    Nature. 2000 Sep 21;407(6802):395-401 PMID: 11014197
  27. A walk-through of the yeast mating pheromone response pathway.
    Peptides. 2004 Sep;25(9):1465-76 PMID: 15374648
  28. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.
    J Theor Biol. 2003 Jul 7;223(1):1-18 PMID: 12782112
  29. FUS3 represses CLN1 and CLN2 and in concert with KSS1 promotes signal transduction.
    Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9392-6 PMID: 1946350
  30. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts.
    Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):975-80 PMID: 12509509
  31. Teleonomic mechanisms in cellular metabolism, growth, and differentiation.
    Cold Spring Harb Symp Quant Biol. 1961;26:389-401 PMID: 14475415
  32. Order of action of components in the yeast pheromone response pathway revealed with a dominant allele of the STE11 kinase and the multiple phosphorylation of the STE7 kinase.
    Genes Dev. 1992 Jul;6(7):1305-18 PMID: 1628833
  33. Graded positional information: interpretation for both fate and guidance.
    Cell. 2003 May 16;113(4):425-8 PMID: 12757702
  34. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network.
    Science. 2002 Aug 9;297(5583):1018-23 PMID: 12169734
  35. Design and constraints of the Drosophila segment polarity module: robust spatial patterning emerges from intertwined cell state switches.
    J Exp Zool. 2002 Oct 15;294(3):179-215 PMID: 12362429
  36. Bistable expression of WOR1, a master regulator of white-opaque switching in Candida albicans.
    Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12813-8 PMID: 16905649
  37. Identification of a gene necessary for cell cycle arrest by a negative growth factor of yeast: FAR1 is an inhibitor of a G1 cyclin, CLN2.
    Cell. 1990 Nov 30;63(5):999-1011 PMID: 2147873
  38. Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop.
    Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12807-12 PMID: 16899543
  39. Quantitation of alpha-factor internalization and response during the Saccharomyces cerevisiae cell cycle.
    Mol Cell Biol. 1991 Oct;11(10):5251-8 PMID: 1656226
Article Info
Journal
Current biology : CB
Abbr.
Curr Biol
ISSN
0960-9822
Published
2007-04-17
Epub
2007-00-29
Pages
668-77
Language
English
Region
England
NLM ID
9107782
PMCID
PMC1914375
Subset
IM
Grants
NIGMS NIH HHS · P01 GM062566 · United States
NIGMS NIH HHS · P50 GM068763 · United States
NIGMS NIH HHS · GM062566 · United States
NIGMS NIH HHS · GM068763 · United States
Corrections
CommentIn
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]