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PMID: 1747120 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Mutagenesis of arginine residues in the catalytic cleft of Escherichia coli porphobilinogen deaminase that affects dipyrromethane cofactor assembly and tetrapyrrole chain initiation and elongation.

The Biochemical journal ·Vol. 280 ( Pt 2) ·1991-12-01 ·Pages 445-9

Jordan PM, Woodcock SC

Abstract

Substitutions of conserved arginine residues in the catalytic cleft of Escherichia coli porphobilinogen deaminase were constructed by site-specific mutagenesis of the hemC gene. Mutant proteins exhibited a range of defects including the failure to assemble the dipyrromethane cofactor and the inability to initiate and propagate the tetrapolymerization reaction. Mutations of arginine residues at positions 11, 131, 132 and 155, all of which interact with the carboxylic acid side chains of the dipyrromethane cofactor, were the most disruptive.

Related Genes
MeSH Terms
Amino Acid Sequence Arginine/genetics Catalysis Chromatography, Liquid Escherichia coli/enzymology Hydroxymethylbilane Synthase/genetics,metabolism Kinetics Molecular Sequence Data Mutagenesis Peptide Chain Elongation, Translational Peptide Chain Initiation, Translational Porphobilinogen/metabolism Pyrroles/metabolism Tetrapyrroles
Chemicals
Pyrroles Tetrapyrroles dipyrromethane cofactor Porphobilinogen Arginine Hydroxymethylbilane Synthase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Jordan P M
School of Biological Sciences, Queen Mary College, University of London, U.K.
Woodcock S C
References (19)
19 references, click to expand
  1. Studies on the mechanism of hydroxymethylbilane synthase concerning the role of arginine residues in substrate binding.
    Biochem J. 1991 Apr 15;275 ( Pt 2):447-52 PMID: 2025226
  2. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  3. Reconstitution of apo-porphobilinogen deaminase: structural changes induced by cofactor binding.
    FEBS Lett. 1989 Jan 2;242(2):319-24 PMID: 2644132
  4. Evidence that the pyrromethane cofactor of hydroxymethylbilane synthase (porphobilinogen deaminase) is bound through the sulphur atom of a cysteine residue.
    Biochem J. 1988 Jun 15;252(3):909-12 PMID: 3421931
  5. Identification of a cysteine residue as the binding site for the dipyrromethane cofactor at the active site of Escherichia coli porphobilinogen deaminase.
    FEBS Lett. 1988 Aug 1;235(1-2):189-93 PMID: 3042456
  6. Isolation and characterisation of a cDNA clone for a chlorophyll synthesis enzyme from Euglena gracilis. The chloroplast enzyme hydroxymethylbilane synthase (porphobilinogen deaminase) is synthesised with a very long transit peptide in Euglena.
    Eur J Biochem. 1989 Sep 15;184(2):353-9 PMID: 2477247
  7. The mouse porphobilinogen deaminase gene. Structural organization, sequence, and transcriptional analysis.
    J Biol Chem. 1989 Sep 5;264(25):14829-34 PMID: 2768242
  8. Purification, crystallization and properties of porphobilinogen deaminase from a recombinant strain of Escherichia coli K12.
    Biochem J. 1988 Sep 1;254(2):427-35 PMID: 3052434
  9. Investigation into the nature of substrate binding to the dipyrromethane cofactor of Escherichia coli porphobilinogen deaminase.
    Biochemistry. 1988 Dec 13;27(25):9020-30 PMID: 3069132
  10. Rat porphobilinogen deaminase cDNA: nucleotide sequence of the erythropoietic form.
    Nucleic Acids Res. 1988 Apr 11;16(7):3102 PMID: 3368319
  11. Nucleotide sequence of the hemC locus encoding porphobilinogen deaminase of Escherichia coli K12.
    Nucleic Acids Res. 1986 Aug 11;14(15):6215-26 PMID: 3529035
  12. Molecular cloning and complete primary sequence of human erythrocyte porphobilinogen deaminase.
    Nucleic Acids Res. 1986 Aug 11;14(15):5955-68 PMID: 2875434
  13. Evidence for a dipyrromethane cofactor at the catalytic site of E. coli porphobilinogen deaminase.
    FEBS Lett. 1987 Dec 10;225(1-2):87-92 PMID: 3079571
  14. Purification of porphobilinogen synthase from bovine liver.
    Methods Enzymol. 1986;123:427-34 PMID: 3702740
  15. Inhibition of restriction endonuclease Nci I cleavage by phosphorothioate groups and its application to oligonucleotide-directed mutagenesis.
    Nucleic Acids Res. 1986 Dec 22;14(24):9679-98 PMID: 3027659
  16. Cloning and characterization of the hemA region of the Bacillus subtilis chromosome.
    J Bacteriol. 1990 May;172(5):2250-8 PMID: 2110138
  17. The isolation and characterization of catalytically competent porphobilinogen deaminase-intermediate complexes.
    FEBS Lett. 1981 Jul 6;129(2):220-4 PMID: 6974651
  18. The biosynthesis of uroporphyrinogen III: order of assembly of the four porphobilinogen molecules in the formation of the tetrapyrrole ring.
    FEBS Lett. 1979 Aug 15;104(2):364-6 PMID: 314389
  19. Two different point G to A mutations in exon 10 of the porphobilinogen deaminase gene are responsible for acute intermittent porphyria.
    J Clin Invest. 1990 Nov;86(5):1511-6 PMID: 2243128
Article Info
Journal
The Biochemical journal
Abbr.
Biochem J
ISSN
0264-6021
Published
1991-12-01
Pages
445-9
Language
English
Region
England
NLM ID
2984726R
PMCID
PMC1130568
Subset
IM
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