Abstract
Substitutions of conserved arginine residues in the catalytic cleft of Escherichia coli porphobilinogen deaminase were constructed by site-specific mutagenesis of the hemC gene. Mutant proteins exhibited a range of defects including the failure to assemble the dipyrromethane cofactor and the inability to initiate and propagate the tetrapolymerization reaction. Mutations of arginine residues at positions 11, 131, 132 and 155, all of which interact with the carboxylic acid side chains of the dipyrromethane cofactor, were the most disruptive.
MeSH Terms
Amino Acid Sequence
Arginine/genetics
Catalysis
Chromatography, Liquid
Escherichia coli/enzymology
Hydroxymethylbilane Synthase/genetics,metabolism
Kinetics
Molecular Sequence Data
Mutagenesis
Peptide Chain Elongation, Translational
Peptide Chain Initiation, Translational
Porphobilinogen/metabolism
Pyrroles/metabolism
Tetrapyrroles
Chemicals
Pyrroles
Tetrapyrroles
dipyrromethane cofactor
Porphobilinogen
Arginine
Hydroxymethylbilane Synthase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Jordan P M
School of Biological Sciences, Queen Mary College, University of London, U.K.
Woodcock S C
References (19)
19 references, click to expand
-
Studies on the mechanism of hydroxymethylbilane synthase concerning the role of arginine residues in substrate binding.
Biochem J. 1991 Apr 15;275 ( Pt 2):447-52
PMID: 2025226
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Nature. 1970 Aug 15;227(5259):680-5
PMID: 5432063
-
Reconstitution of apo-porphobilinogen deaminase: structural changes induced by cofactor binding.
FEBS Lett. 1989 Jan 2;242(2):319-24
PMID: 2644132
-
Evidence that the pyrromethane cofactor of hydroxymethylbilane synthase (porphobilinogen deaminase) is bound through the sulphur atom of a cysteine residue.
Biochem J. 1988 Jun 15;252(3):909-12
PMID: 3421931
-
Identification of a cysteine residue as the binding site for the dipyrromethane cofactor at the active site of Escherichia coli porphobilinogen deaminase.
FEBS Lett. 1988 Aug 1;235(1-2):189-93
PMID: 3042456
-
Isolation and characterisation of a cDNA clone for a chlorophyll synthesis enzyme from Euglena gracilis. The chloroplast enzyme hydroxymethylbilane synthase (porphobilinogen deaminase) is synthesised with a very long transit peptide in Euglena.
Eur J Biochem. 1989 Sep 15;184(2):353-9
PMID: 2477247
-
The mouse porphobilinogen deaminase gene. Structural organization, sequence, and transcriptional analysis.
J Biol Chem. 1989 Sep 5;264(25):14829-34
PMID: 2768242
-
Purification, crystallization and properties of porphobilinogen deaminase from a recombinant strain of Escherichia coli K12.
Biochem J. 1988 Sep 1;254(2):427-35
PMID: 3052434
-
Investigation into the nature of substrate binding to the dipyrromethane cofactor of Escherichia coli porphobilinogen deaminase.
Biochemistry. 1988 Dec 13;27(25):9020-30
PMID: 3069132
-
Rat porphobilinogen deaminase cDNA: nucleotide sequence of the erythropoietic form.
Nucleic Acids Res. 1988 Apr 11;16(7):3102
PMID: 3368319
-
Nucleotide sequence of the hemC locus encoding porphobilinogen deaminase of Escherichia coli K12.
Nucleic Acids Res. 1986 Aug 11;14(15):6215-26
PMID: 3529035
-
Molecular cloning and complete primary sequence of human erythrocyte porphobilinogen deaminase.
Nucleic Acids Res. 1986 Aug 11;14(15):5955-68
PMID: 2875434
-
Evidence for a dipyrromethane cofactor at the catalytic site of E. coli porphobilinogen deaminase.
FEBS Lett. 1987 Dec 10;225(1-2):87-92
PMID: 3079571
-
Purification of porphobilinogen synthase from bovine liver.
Methods Enzymol. 1986;123:427-34
PMID: 3702740
-
Inhibition of restriction endonuclease Nci I cleavage by phosphorothioate groups and its application to oligonucleotide-directed mutagenesis.
Nucleic Acids Res. 1986 Dec 22;14(24):9679-98
PMID: 3027659
-
Cloning and characterization of the hemA region of the Bacillus subtilis chromosome.
J Bacteriol. 1990 May;172(5):2250-8
PMID: 2110138
-
The isolation and characterization of catalytically competent porphobilinogen deaminase-intermediate complexes.
FEBS Lett. 1981 Jul 6;129(2):220-4
PMID: 6974651
-
The biosynthesis of uroporphyrinogen III: order of assembly of the four porphobilinogen molecules in the formation of the tetrapyrrole ring.
FEBS Lett. 1979 Aug 15;104(2):364-6
PMID: 314389
-
Two different point G to A mutations in exon 10 of the porphobilinogen deaminase gene are responsible for acute intermittent porphyria.
J Clin Invest. 1990 Nov;86(5):1511-6
PMID: 2243128