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PMID: 18308592 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Crossreactive T Cells spotlight the germline rules for alphabeta T cell-receptor interactions with MHC molecules.

Immunity ·Vol. 28 ·No. 3 ·2008-03-00 ·Pages 324-34

Dai S, Huseby ES, Rubtsova K, Scott-Browne J, Crawford F, Macdonald WA, Marrack P, Kappler JW

Abstract

To test whether highly crossreactive alphabeta T cell receptors (TCRs) produced during limited negative selection best illustrate evolutionarily conserved interactions between TCR and major histocompatibility complex (MHC) molecules, we solved the structures of three TCRs bound to the same MHC II peptide (IAb-3K). The TCRs had similar affinities for IAb-3K but varied from noncrossreactive to extremely crossreactive with other peptides and MHCs. Crossreactivity correlated with a shrinking, increasingly hydrophobic TCR-ligand interface, involving fewer TCR amino acids. A few CDR1 and CDR2 amino acids dominated the most crossreactive TCR interface with MHC, including Vbeta8 48Y and 54E and Valpha4 29Y, arranged to impose the familiar diagonal orientation of TCR on MHC. These interactions contribute to MHC binding by other TCRs using related V regions, but not usually so dominantly. These data show that crossreactive TCRs can spotlight the evolutionarily conserved features of TCR-MHC interactions and that these interactions impose the diagonal docking of TCRs on MHC.

MeSH Terms
Amino Acid Sequence Animals Antigen Presentation/immunology Conserved Sequence Cross Reactions Histocompatibility Antigens Class II/immunology Humans Lymphocyte Activation/immunology Protein Structure, Quaternary Receptors, Antigen, T-Cell, alpha-beta/chemistry,immunology Surface Plasmon Resonance T-Lymphocytes/immunology
Chemicals
Histocompatibility Antigens Class II Receptors, Antigen, T-Cell, alpha-beta
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Dai Shaodong
Howard Hughes Medical Institute and National Jewish Medical and Research Center, Denver, CO 80206, USA.
Huseby Eric S
Rubtsova Kira
Scott-Browne James
Crawford Frances
Macdonald Whitney A
Marrack Philippa
Kappler John W
References (57)
57 references, click to expand
  1. Control of effector CD8+ T cell function by the transcription factor Eomesodermin.
    Science. 2003 Nov 7;302(5647):1041-3 PMID: 14605368
  2. Mice lacking H2-M complexes, enigmatic elements of the MHC class II peptide-loading pathway.
    Cell. 1996 Feb 23;84(4):531-41 PMID: 8598040
  3. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.
    Proteins. 1991;11(4):281-96 PMID: 1758883
  4. The repertoire of T cells shaped by a single MHC/peptide ligand.
    Cell. 1996 Feb 23;84(4):521-9 PMID: 8598039
  5. Shapes of MHC restriction.
    Immunity. 1999 Jan;10(1):1-7 PMID: 10023765
  6. Alternate interactions define the binding of peptides to the MHC molecule IA(b).
    Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8820-5 PMID: 12084926
  7. Antigen recognition properties of mutant V beta 3+ T cell receptors are consistent with an immunoglobulin-like structure for the receptor.
    J Exp Med. 1993 Jan 1;177(1):119-25 PMID: 8380294
  8. Likelihood-enhanced fast translation functions.
    Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):458-64 PMID: 15805601
  9. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  10. How a single T cell receptor recognizes both self and foreign MHC.
    Cell. 2007 Apr 6;129(1):135-46 PMID: 17418792
  11. The production, purification and crystallization of a soluble heterodimeric form of a highly selected T-cell receptor in its unliganded and liganded state.
    Acta Crystallogr D Biol Crystallogr. 2002 Dec;58(Pt 12):2131-4 PMID: 12454477
  12. T-cell antigen receptor genes and T-cell recognition.
    Nature. 1988 Aug 4;334(6181):395-402 PMID: 3043226
  13. H-2 antigens of the thymus determine lymphocyte specificity.
    J Exp Med. 1978 Sep 1;148(3):766-75 PMID: 308986
  14. A T cell receptor flattens a bulged antigenic peptide presented by a major histocompatibility complex class I molecule.
    Nat Immunol. 2007 Mar;8(3):268-76 PMID: 17259989
  15. Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'.
    Nat Immunol. 2007 Sep;8(9):975-83 PMID: 17694060
  16. An inverse relationship between T cell receptor affinity and antigen dose during CD4(+) T cell responses in vivo and in vitro.
    Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9781-6 PMID: 10449771
  17. Structure of the complex between human T-cell receptor, viral peptide and HLA-A2.
    Nature. 1996 Nov 14;384(6605):134-41 PMID: 8906788
  18. Positive and negative thymocyte selection induced by different concentrations of a single peptide.
    Science. 1994 Mar 18;263(5153):1615-8 PMID: 8128249
  19. H2-M mutant mice are defective in the peptide loading of class II molecules, antigen presentation, and T cell repertoire selection.
    Cell. 1996 Feb 23;84(4):543-50 PMID: 8598041
  20. T cell receptor antagonist peptides induce positive selection.
    Cell. 1994 Jan 14;76(1):17-27 PMID: 8287475
  21. Structure of a human autoimmune TCR bound to a myelin basic protein self-peptide and a multiple sclerosis-associated MHC class II molecule.
    EMBO J. 2005 Sep 7;24(17):2968-79 PMID: 16079912
  22. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling.
    Electrophoresis. 1997 Dec;18(15):2714-23 PMID: 9504803
  23. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  24. IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains.
    Dev Comp Immunol. 2003 Jan;27(1):55-77 PMID: 12477501
  25. Structure of an autoimmune T cell receptor complexed with class II peptide-MHC: insights into MHC bias and antigen specificity.
    Immunity. 2005 Jan;22(1):81-92 PMID: 15664161
  26. T cell tolerance by clonal elimination in the thymus.
    Cell. 1987 Apr 24;49(2):273-80 PMID: 3494522
  27. Deletion of CD4 and CD8 coreceptors permits generation of alphabetaT cells that recognize antigens independently of the MHC.
    Immunity. 2007 Nov;27(5):735-50 PMID: 18023370
  28. The crystal structure of a T cell receptor in complex with peptide and MHC class II.
    Science. 1999 Dec 3;286(5446):1913-21 PMID: 10583947
  29. Evidence for a differential avidity model of T cell selection in the thymus.
    Cell. 1994 Feb 25;76(4):651-63 PMID: 8124708
  30. Comparison of human and mouse T-cell receptor variable gene segment subfamilies.
    Immunogenetics. 1995;42(6):531-40 PMID: 8550094
  31. Structure of a complex of the human alpha/beta T cell receptor (TCR) HA1.7, influenza hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401): insight into TCR cross-restriction and alloreactivity.
    J Exp Med. 2002 Mar 4;195(5):571-81 PMID: 11877480
  32. Antigen presentation and T cell development in H2-M-deficient mice.
    Science. 1996 Mar 1;271(5253):1278-81 PMID: 8638109
  33. The T cell repertoire may be biased in favor of MHC recognition.
    Cell. 1986 Nov 7;47(3):349-57 PMID: 3490311
  34. Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen.
    Science. 1998 Feb 20;279(5354):1166-72 PMID: 9469799
  35. Structure of a covalently stabilized complex of a human alphabeta T-cell receptor, influenza HA peptide and MHC class II molecule, HLA-DR1.
    EMBO J. 2000 Nov 1;19(21):5611-24 PMID: 11060013
  36. Mouse T-cell receptor variable gene segment families.
    Immunogenetics. 1995;42(6):501-30 PMID: 8550093
  37. Structural comparison of allogeneic and syngeneic T cell receptor-peptide-major histocompatibility complex complexes: a buried alloreactive mutation subtly alters peptide presentation substantially increasing V(beta) Interactions.
    J Exp Med. 2002 May 6;195(9):1175-86 PMID: 11994422
  38. How many thymocytes audition for selection?
    J Exp Med. 1997 Oct 6;186(7):1149-58 PMID: 9314563
  39. CDR3 loop flexibility contributes to the degeneracy of TCR recognition.
    Nat Immunol. 2003 Mar;4(3):241-7 PMID: 12563259
  40. A structural basis for immunodominant human T cell receptor recognition.
    Nat Immunol. 2003 Jul;4(7):657-63 PMID: 12796775
  41. Electron-density map interpretation.
    Methods Enzymol. 1997;277:173-208 PMID: 18488310
  42. Retroviral-mediated transfer of the green fluorescent protein gene into murine hematopoietic cells facilitates scoring and selection of transduced progenitors in vitro and identification of genetically modified cells in vivo.
    Blood. 1997 Sep 1;90(5):1777-86 PMID: 9292510
  43. The MHC reactivity of the T cell repertoire prior to positive and negative selection.
    Cell. 1997 Mar 7;88(5):627-36 PMID: 9054502
  44. Negative selection imparts peptide specificity to the mature T cell repertoire.
    Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11565-70 PMID: 14504410
  45. How the T cell repertoire becomes peptide and MHC specific.
    Cell. 2005 Jul 29;122(2):247-60 PMID: 16051149
  46. On the thymus in the differentiation of "H-2 self-recognition" by T cells: evidence for dual recognition?
    J Exp Med. 1978 Mar 1;147(3):882-96 PMID: 305459
  47. Interface-disrupting amino acids establish specificity between T cell receptors and complexes of major histocompatibility complex and peptide.
    Nat Immunol. 2006 Nov;7(11):1191-9 PMID: 17041605
  48. T cell selection in the thymus.
    Immunol Rev. 1988 Jan;101:173-90 PMID: 3280468
  49. How TCRs bind MHCs, peptides, and coreceptors.
    Annu Rev Immunol. 2006;24:419-66 PMID: 16551255
  50. The T cell receptor.
    Science. 1987 Nov 20;238(4830):1073-9 PMID: 3317824
  51. An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex.
    Science. 1996 Oct 11;274(5285):209-19 PMID: 8824178
  52. The interaction of nominal antigen with T cell antigen receptors. I. Specific binding of multivalent nominal antigen to cytolytic T cell clones.
    J Immunol. 1985 Aug;135(2):906-14 PMID: 2409158
  53. What guides MHC-restricted TCR recognition?
    Semin Immunol. 2007 Aug;19(4):225-35 PMID: 17521918
  54. The somatic generation of immune recognition.
    Eur J Immunol. 1971 Jan;1(1):1-9 PMID: 14978855
  55. T-cell-specific deletion of T-cell receptor transgenes allows functional rearrangement of endogenous alpha- and beta-genes.
    Nature. 1988 Jul 14;334(6178):156-9 PMID: 3260351
  56. A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity.
    Immunity. 2003 Jan;18(1):53-64 PMID: 12530975
  57. A correlation between TCR Valpha docking on MHC and CD8 dependence: implications for T cell selection.
    Immunity. 2003 Oct;19(4):595-606 PMID: 14563323
Article Info
Journal
Immunity
Abbr.
Immunity
ISSN
1097-4180
Published
2008-03-00
Epub
2008-00-28
Pages
324-34
Language
English
Region
United States
NLM ID
9432918
PMCID
PMC2287197
Subset
IM
Grants
NIAID NIH HHS · R01 AI018785 · United States
NIAID NIH HHS · R01 AI052225 · United States
NIAID NIH HHS · P01 AI022295-20 · United States
NIAID NIH HHS · AI-17134 · United States
NIAID NIH HHS · R37 AI018785 · United States
Howard Hughes Medical Institute · United States
NIAID NIH HHS · R56 AI017134 · United States
NIAID NIH HHS · R01 AI018785-24 · United States
NIAID NIH HHS · R01 AI052225-05 · United States
NIAID NIH HHS · R56 AI018785 · United States
NIAID NIH HHS · R01 AI018785-25A1 · United States
NIAID NIH HHS · R01 AI018785-23 · United States
NIAID NIH HHS · R01 AI018785-26 · United States
NIAID NIH HHS · AI-18785 · United States
NIAID NIH HHS · R01 AI017134 · United States
NIAID NIH HHS · R01 AI018785-22 · United States
NIAID NIH HHS · P01 AI022295-21A1 · United States
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NIAID NIH HHS · P01 AI022295-21A16790 · United States
NIAID NIH HHS · P01 AI022295 · United States
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