-
RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Science. 2007 Jun 8;316(5830):1484-8
PMID: 17510325
-
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands.
Genes Dev. 2008 Jan 1;22(1):8-13
PMID: 18172160
-
Adaptive evolution of newly emerged micro-RNA genes in Drosophila.
Mol Biol Evol. 2008 May;25(5):929-38
PMID: 18296702
-
The birth and death of microRNA genes in Drosophila.
Nat Genet. 2008 Mar;40(3):351-5
PMID: 18278047
-
Biological function of unannotated transcription during the early development of Drosophila melanogaster.
Nat Genet. 2006 Oct;38(10):1151-8
PMID: 16951679
-
Evolution of plant microRNA gene families.
Cell Res. 2007 Mar;17(3):212-8
PMID: 17130846
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.
PLoS One. 2007 Feb 14;2(2):e219
PMID: 17299599
-
RNA polymerase III transcribes human microRNAs.
Nat Struct Mol Biol. 2006 Dec;13(12):1097-101
PMID: 17099701
-
Combinatorial microRNA target predictions.
Nat Genet. 2005 May;37(5):495-500
PMID: 15806104
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
Nature. 2005 Feb 17;433(7027):769-73
PMID: 15685193
-
Specialization and evolution of endogenous small RNA pathways.
Nat Rev Genet. 2007 Nov;8(11):884-96
PMID: 17943195
-
Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci.
Genes Dev. 2008 Jan 1;22(1):26-36
PMID: 18172163
-
The microRNAs of Caenorhabditis elegans.
Genes Dev. 2003 Apr 15;17(8):991-1008
PMID: 12672692
-
LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?
Bioessays. 2005 Aug;27(8):775-84
PMID: 16015595
-
Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs.
Nat Rev Genet. 2004 May;5(5):396-400
PMID: 15143321
-
RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex.
EMBO Rep. 2007 Aug;8(8):763-9
PMID: 17599088
-
Antisense transcription in the mammalian transcriptome.
Science. 2005 Sep 2;309(5740):1564-6
PMID: 16141073
-
An extensive class of small RNAs in Caenorhabditis elegans.
Science. 2001 Oct 26;294(5543):862-4
PMID: 11679672
-
The probability of duplicate gene preservation by subfunctionalization.
Genetics. 2000 Jan;154(1):459-73
PMID: 10629003
-
The evolutionary fate and consequences of duplicate genes.
Science. 2000 Nov 10;290(5494):1151-5
PMID: 11073452
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
Nature. 2000 Feb 24;403(6772):901-6
PMID: 10706289
-
Identification of virus-encoded microRNAs.
Science. 2004 Apr 30;304(5671):734-6
PMID: 15118162
-
The normal function of a speciation gene, Odysseus, and its hybrid sterility effect.
Science. 2004 Jul 2;305(5680):81-3
PMID: 15232104
-
Diversity of microRNAs in human and chimpanzee brain.
Nat Genet. 2006 Dec;38(12):1375-7
PMID: 17072315
-
Intronic microRNA precursors that bypass Drosha processing.
Nature. 2007 Jul 5;448(7149):83-6
PMID: 17589500
-
Identification of microRNAs of the herpesvirus family.
Nat Methods. 2005 Apr;2(4):269-76
PMID: 15782219
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution.
Nat Struct Mol Biol. 2008 Apr;15(4):354-63
PMID: 18376413
-
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis.
Genome Res. 2006 Oct;16(10):1289-98
PMID: 16954537
-
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans.
Cell. 2006 Dec 15;127(6):1193-207
PMID: 17174894
-
Mammalian microRNAs derived from genomic repeats.
Trends Genet. 2005 Jun;21(6):322-6
PMID: 15922829
-
Processing of intronic microRNAs.
EMBO J. 2007 Feb 7;26(3):775-83
PMID: 17255951
-
RNA editing of human microRNAs.
Genome Biol. 2006;7(4):R27
PMID: 16594986
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.
Cell. 2006 Jun 2;125(5):887-901
PMID: 16751099
-
Origin of a substantial fraction of human regulatory sequences from transposable elements.
Trends Genet. 2003 Feb;19(2):68-72
PMID: 12547512
-
microPrimer: the biogenesis and function of microRNA.
Development. 2005 Nov;132(21):4645-52
PMID: 16224044
-
The Bearded box, a novel 3' UTR sequence motif, mediates negative post-transcriptional regulation of Bearded and Enhancer of split Complex gene expression.
Development. 1997 Dec;124(23):4847-56
PMID: 9428421
-
MicroRNA-directed cleavage of HOXB8 mRNA.
Science. 2004 Apr 23;304(5670):594-6
PMID: 15105502
-
A bulged lin-4/lin-14 RNA duplex is sufficient for Caenorhabditis elegans lin-14 temporal gradient formation.
Genes Dev. 1996 Dec 1;10(23):3041-50
PMID: 8957004
-
The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA.
Cell. 1997 Mar 7;88(5):637-46
PMID: 9054503
-
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA.
Nature. 2000 Nov 2;408(6808):86-9
PMID: 11081512
-
Identification of hundreds of conserved and nonconserved human microRNAs.
Nat Genet. 2005 Jul;37(7):766-70
PMID: 15965474
-
The small RNA profile during Drosophila melanogaster development.
Dev Cell. 2003 Aug;5(2):337-50
PMID: 12919683
-
Computational identification of Drosophila microRNA genes.
Genome Biol. 2003;4(7):R42
PMID: 12844358
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
Plant Cell. 2004 Aug;16(8):2001-19
PMID: 15258262
-
The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings.
Genes Dev. 2005 Dec 15;19(24):2947-52
PMID: 16357215
-
Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation.
Nat Genet. 2002 Apr;30(4):363-4
PMID: 11896390
-
Identification of novel genes coding for small expressed RNAs.
Science. 2001 Oct 26;294(5543):853-8
PMID: 11679670
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.
Cell. 1993 Dec 3;75(5):843-54
PMID: 8252621
-
miRBase: tools for microRNA genomics.
Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8
PMID: 17991681
-
Identification of mammalian microRNA host genes and transcription units.
Genome Res. 2004 Oct;14(10A):1902-10
PMID: 15364901
-
The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans.
Dev Cell. 2005 Sep;9(3):403-14
PMID: 16139228
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.
Cell. 1993 Dec 3;75(5):855-62
PMID: 8252622
-
Impact of transposable elements on the evolution of mammalian gene regulation.
Cytogenet Genome Res. 2005;110(1-4):342-52
PMID: 16093686
-
Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999.
Semin Cell Dev Biol. 1999 Oct;10(5):517-22
PMID: 10597635
-
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.
Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):18017-22
PMID: 16330759
-
Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs.
Genes Dev. 2005 May 1;19(9):1067-80
PMID: 15833912
-
Preservation of duplicate genes by complementary, degenerative mutations.
Genetics. 1999 Apr;151(4):1531-45
PMID: 10101175
-
The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation.
Dev Biol. 1999 Dec 15;216(2):671-80
PMID: 10642801
-
Conservation and evolution of miRNA regulatory programs in plant development.
Curr Opin Plant Biol. 2007 Oct;10(5):503-11
PMID: 17709279
-
How does RNA editing affect dsRNA-mediated gene silencing?
Cold Spring Harb Symp Quant Biol. 2006;71:285-92
PMID: 17381308
-
Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes.
Cold Spring Harb Symp Quant Biol. 2006;71:149-56
PMID: 17381291
-
Characterization of two RNAs transcribed from the cis-regulatory region of the abd-A domain within the Drosophila bithorax complex.
Proc Natl Acad Sci U S A. 1990 May;87(9):3259-63
PMID: 1692133
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.
Science. 2001 Oct 26;294(5543):858-62
PMID: 11679671
-
The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.
Cell. 2007 Jul 13;130(1):89-100
PMID: 17599402
-
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.
Genome Res. 2007 Dec;17(12):1850-64
PMID: 17989254
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs.
Science. 2007 Feb 23;315(5815):1137-40
PMID: 17322061
-
MicroRNAs in plants.
Genes Dev. 2002 Jul 1;16(13):1616-26
PMID: 12101121
-
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health.
Genome Res. 2008 Mar;18(3):343-58
PMID: 18256243
-
Cell-type-specific signatures of microRNAs on target mRNA expression.
Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2746-51
PMID: 16477010
-
A sex-ratio meiotic drive system in Drosophila simulans. II: an X-linked distorter.
PLoS Biol. 2007 Nov 6;5(11):e293
PMID: 17988173
-
Splitting pairs: the diverging fates of duplicated genes.
Nat Rev Genet. 2002 Nov;3(11):827-37
PMID: 12415313
-
microRNA target predictions across seven Drosophila species and comparison to mammalian targets.
PLoS Comput Biol. 2005 Jun;1(1):e13
PMID: 16103902
-
A mammalian microRNA expression atlas based on small RNA library sequencing.
Cell. 2007 Jun 29;129(7):1401-14
PMID: 17604727
-
MicroRNA genes are transcribed by RNA polymerase II.
EMBO J. 2004 Oct 13;23(20):4051-60
PMID: 15372072
-
Mammalian mirtron genes.
Mol Cell. 2007 Oct 26;28(2):328-36
PMID: 17964270
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
Cell. 2005 Jan 14;120(1):15-20
PMID: 15652477
-
A sex-ratio meiotic drive system in Drosophila simulans. I: an autosomal suppressor.
PLoS Biol. 2007 Nov 6;5(11):e292
PMID: 17988172
-
Functional siRNAs and miRNAs exhibit strand bias.
Cell. 2003 Oct 17;115(2):209-16
PMID: 14567918
-
Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex.
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16847-52
PMID: 12481037
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
Science. 2006 Apr 7;312(5770):75-9
PMID: 16484454
-
Prediction of mammalian microRNA targets.
Cell. 2003 Dec 26;115(7):787-98
PMID: 14697198
-
Principles of microRNA-target recognition.
PLoS Biol. 2005 Mar;3(3):e85
PMID: 15723116
-
New microRNAs from mouse and human.
RNA. 2003 Feb;9(2):175-9
PMID: 12554859
-
Complementary miRNA pairs suggest a regulatory role for miRNA:miRNA duplexes.
RNA. 2004 Feb;10(2):171-5
PMID: 14730015
-
The ABC of the BX-C: the bithorax complex explained.
Development. 2006 Apr;133(8):1413-22
PMID: 16556913
-
The evolution of gene regulation by transcription factors and microRNAs.
Nat Rev Genet. 2007 Feb;8(2):93-103
PMID: 17230196
-
Vertebrate microRNA genes.
Science. 2003 Mar 7;299(5612):1540
PMID: 12624257
-
microRNA functions.
Annu Rev Cell Dev Biol. 2007;23:175-205
PMID: 17506695
-
Subfunctionalization of duplicated genes as a transition state to neofunctionalization.
BMC Evol Biol. 2005 Apr 14;5:28
PMID: 15831095
-
Asymmetry in the assembly of the RNAi enzyme complex.
Cell. 2003 Oct 17;115(2):199-208
PMID: 14567917
-
Phylogenetic shadowing and computational identification of human microRNA genes.
Cell. 2005 Jan 14;120(1):21-4
PMID: 15652478
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution.
Cell. 2005 Dec 16;123(6):1133-46
PMID: 16337999
-
A uniform system for microRNA annotation.
RNA. 2003 Mar;9(3):277-9
PMID: 12592000
-
The limits of subfunctionalization.
BMC Evol Biol. 2007 Nov 07;7:213
PMID: 17988397
-
The K box, a conserved 3' UTR sequence motif, negatively regulates accumulation of enhancer of split complex transcripts.
Development. 1998 Oct;125(20):4077-88
PMID: 9735368
-
MicroRNAs in the Drosophila bithorax complex.
Genes Dev. 2008 Jan 1;22(1):14-9
PMID: 18172161
-
Origin and evolution of human microRNAs from transposable elements.
Genetics. 2007 Jun;176(2):1323-37
PMID: 17435244
-
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation.
Cell. 2005 Aug 26;122(4):553-63
PMID: 16122423
-
A family of human microRNA genes from miniature inverted-repeat transposable elements.
PLoS One. 2007 Feb 14;2(2):e203
PMID: 17301878
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
Curr Biol. 2002 Sep 3;12(17):1484-95
PMID: 12225663
-
Identification of Drosophila MicroRNA targets.
PLoS Biol. 2003 Dec;1(3):E60
PMID: 14691535
-
Regulation of Drosophila neurogenesis by RNA:RNA duplexes?
Cell. 1998 Jun 26;93(7):1103-4
PMID: 9657143
-
The widespread impact of mammalian MicroRNAs on mRNA repression and evolution.
Science. 2005 Dec 16;310(5755):1817-21
PMID: 16308420
-
microRNAs: runts of the genome assert themselves.
Curr Biol. 2003 Dec 2;13(23):R925-36
PMID: 14654021
-
The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR.
Genes Dev. 2004 Jan 15;18(2):132-7
PMID: 14729570