Home LiteratureArticle Details
PMID: 18718917 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Adaptive evolution in rodent seminal vesicle secretion proteins.

Molecular biology and evolution ·Vol. 25 ·No. 11 ·2008-11-00 ·Pages 2301-10

Karn RC, Clark NL, Nguyen ED, Swanson WJ

Abstract

Proteins involved in reproductive fitness have evolved unusually rapidly across diverse groups of organisms. These reproductive proteins show unusually high rates of amino acid substitutions, suggesting that the proteins have been subject to positive selection. We sought to identify seminal fluid proteins experiencing adaptive evolution because such proteins are often involved in sperm competition, host immunity to pathogens, and manipulation of female reproductive physiology and behavior. We performed an evolutionary screen of the mouse prostate transcriptome for genes with elevated evolutionary rates between mouse and rat. We observed that secreted rodent prostate proteins evolve approximately twice as fast as nonsecreted proteins, remarkably similar to findings in the primate prostate and in the Drosophila male accessory gland. Our screen led us to identify and characterize a group of seminal vesicle secretion (Svs) proteins and to show that the gene Svs7 is evolving very rapidly, with many amino acid sites under positive selection. Another gene in this group, Svs5, showed evidence of branch-specific selection in the rat. We also found that Svs7 is under selection in primates and, by using three-dimensional models, demonstrated that the same regions have been under selection in both groups. Svs7 has been identified as mouse caltrin, a protein involved in sperm capacitation, the process responsible for the timing of changes in sperm activity and behavior, following ejaculation. We propose that the most likely explanation of the adaptive evolution of Svs7 that we have observed in rodents and primates stems from an important function in sperm competition.

MeSH Terms
Adaptation, Physiological/genetics Animals Carrier Proteins/genetics,physiology Evolution, Molecular Humans Male Mice Rats Selection, Genetic Seminal Vesicle Secretory Proteins/genetics,metabolism,physiology
Chemicals
Carrier Proteins Pate4 protein, mouse Seminal Vesicle Secretory Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Karn Robert C
Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [email protected]
Clark Nathaniel L
Nguyen Eric D
Swanson Willie J
References (49)
49 references, click to expand
  1. Molecular cloning of complementary DNA encoding mouse seminal vesicle-secreted protein SVS I and demonstration of homology with copper amine oxidases.
    Biol Reprod. 2003 Dec;69(6):1923-30 PMID: 12930721
  2. PAML 4: phylogenetic analysis by maximum likelihood.
    Mol Biol Evol. 2007 Aug;24(8):1586-91 PMID: 17483113
  3. Bayes empirical bayes inference of amino acid sites under positive selection.
    Mol Biol Evol. 2005 Apr;22(4):1107-18 PMID: 15689528
  4. Synthesis of novel anti-inflammatory peptides derived from the amino-acid sequence of the bioactive protein SV-IV.
    Eur J Biochem. 2001 Jun;268(12):3399-406 PMID: 11422369
  5. Molecular signatures of natural selection.
    Annu Rev Genet. 2005;39:197-218 PMID: 16285858
  6. Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
    Nature. 2004 Apr 1;428(6982):493-521 PMID: 15057822
  7. Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila.
    Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7375-9 PMID: 11404480
  8. Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites.
    Mol Biol Evol. 2000 Oct;17(10):1446-55 PMID: 11018152
  9. Identification and comparative analysis of accessory gland proteins in Orthoptera.
    Genome. 2006 Sep;49(9):1069-80 PMID: 17110987
  10. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene.
    Genetics. 1998 Mar;148(3):929-36 PMID: 9539414
  11. Comparative evolutionary genomics of androgen-binding protein genes.
    Genome Res. 2004 Aug;14(8):1516-29 PMID: 15256509
  12. Characterization of two novel Ly-6 genes. Protein sequence and potential structural similarity to alpha-bungarotoxin and other neurotoxins.
    J Immunol. 1993 Jun 15;150(12):5379-90 PMID: 8515066
  13. Purification, structure, and characterization of caltrin proteins from seminal vesicle of the rat and mouse.
    J Biol Chem. 1992 Oct 15;267(29):20909-15 PMID: 1400406
  14. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases.
    Nucleic Acids Res. 2002 Jan 1;30(1):218-20 PMID: 11752298
  15. Adaptive evolution of proteins secreted during sperm maturation: an analysis of the mouse epididymal transcriptome.
    Mol Biol Evol. 2008 Feb;25(2):383-92 PMID: 18056076
  16. The rapid evolution of reproductive proteins.
    Nat Rev Genet. 2002 Feb;3(2):137-44 PMID: 11836507
  17. Maximum likelihood methods for detecting adaptive evolution after gene duplication.
    J Struct Funct Genomics. 2003;3(1-4):201-12 PMID: 12836699
  18. Accuracy and power of bayes prediction of amino acid sites under positive selection.
    Mol Biol Evol. 2002 Jun;19(6):950-8 PMID: 12032251
  19. Pervasive adaptive evolution in mammalian fertilization proteins.
    Mol Biol Evol. 2003 Jan;20(1):18-20 PMID: 12519901
  20. Evolution of reproductive proteins from animals and plants.
    Reproduction. 2006 Jan;131(1):11-22 PMID: 16388004
  21. Improved prediction of signal peptides: SignalP 3.0.
    J Mol Biol. 2004 Jul 16;340(4):783-95 PMID: 15223320
  22. The evolution of a genetic locus encoding small serine proteinase inhibitors.
    Biochem Biophys Res Commun. 2005 Jul 29;333(2):383-9 PMID: 15950183
  23. The mouse epididymal transcriptome: transcriptional profiling of segmental gene expression in the epididymis.
    Biol Reprod. 2005 Sep;73(3):404-13 PMID: 15878890
  24. Evolution on the X chromosome: unusual patterns and processes.
    Nat Rev Genet. 2006 Aug;7(8):645-53 PMID: 16847464
  25. The evolution of the glandular kallikrein locus: identification of orthologs and pseudogenes in the cotton-top tamarin.
    Gene. 2004 Dec 22;343(2):347-55 PMID: 15588589
  26. Natural selection on protein-coding genes in the human genome.
    Nature. 2005 Oct 20;437(7062):1153-7 PMID: 16237444
  27. A novel heat-labile phospholipid-binding protein, SVS VII, in mouse seminal vesicle as a sperm motility enhancer.
    J Biol Chem. 2001 Mar 9;276(10):6913-21 PMID: 11118436
  28. Models of amino acid substitution and applications to mitochondrial protein evolution.
    Mol Biol Evol. 1998 Dec;15(12):1600-11 PMID: 9866196
  29. Approaches for identifying targets of positive selection.
    Trends Genet. 2007 Nov;23(11):568-77 PMID: 17959267
  30. Sexual selection and the adaptive evolution of mammalian ejaculate proteins.
    Mol Biol Evol. 2008 Jan;25(1):207-19 PMID: 18032407
  31. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol. 1986 Sep;3(5):418-26 PMID: 3444411
  32. PAML: a program package for phylogenetic analysis by maximum likelihood.
    Comput Appl Biosci. 1997 Oct;13(5):555-6 PMID: 9367129
  33. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection.
    Nature. 1988 Sep 8;335(6186):167-70 PMID: 3412472
  34. Happily at work.
    J Biol Chem. 2003 Feb 7;278(6):3499-509 PMID: 12493748
  35. Large-scale and high-confidence proteomic analysis of human seminal plasma.
    Genome Biol. 2006;7(5):R40 PMID: 16709260
  36. Molecular evolution and phylogeny of elapid snake venom three-finger toxins.
    J Mol Evol. 2003 Jul;57(1):110-29 PMID: 12962311
  37. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.
    Mol Biol Evol. 2005 Dec;22(12):2472-9 PMID: 16107592
  38. Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals.
    BMC Evol Biol. 2008 Feb 12;8:46 PMID: 18269759
  39. Semenogelin II gene is replaced by a truncated line 1 repeat in the cotton-top tamarin.
    Biol Reprod. 2001 Aug;65(2):420-5 PMID: 11466209
  40. Comparison of the genomes of human and mouse lays the foundation of genome zoology.
    Hum Mol Genet. 2003 Apr 1;12(7):701-9 PMID: 12651866
  41. Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags.
    Genetics. 2006 Mar;172(3):1675-81 PMID: 16361246
  42. Statistical methods for detecting molecular adaptation.
    Trends Ecol Evol. 2000 Dec 1;15(12):496-503 PMID: 11114436
  43. Pervasive adaptive evolution in primate seminal proteins.
    PLoS Genet. 2005 Sep;1(3):e35 PMID: 16170411
  44. Basic local alignment search tool.
    J Mol Biol. 1990 Oct 5;215(3):403-10 PMID: 2231712
  45. Localization of the transglutaminase cross-linking site in SVS III, a novel glycoprotein secreted from mouse seminal vesicle.
    J Biol Chem. 2002 Feb 1;277(5):3632-9 PMID: 11723121
  46. Semen-coagulating protein, SVS2, in mouse seminal plasma controls sperm fertility.
    Biol Reprod. 2007 Mar;76(3):353-61 PMID: 17123940
  47. Degeneration of the olfactory guanylyl cyclase D gene during primate evolution.
    PLoS One. 2007 Sep 12;2(9):e884 PMID: 17849013
  48. Initial sequencing and comparative analysis of the mouse genome.
    Nature. 2002 Dec 5;420(6915):520-62 PMID: 12466850
  49. Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection.
    Genetics. 2004 Nov;168(3):1457-65 PMID: 15579698
Article Info
Journal
Molecular biology and evolution
Abbr.
Mol Biol Evol
ISSN
1537-1719
Published
2008-11-00
Epub
2008-00-20
Pages
2301-10
Language
English
Region
United States
NLM ID
8501455
PMCID
PMC2727389
Subset
IM
Grants
NIGMS NIH HHS · F32GM084592 · United States
NICHD NIH HHS · HD057974 · United States
NICHD NIH HHS · R03 HD054631 · United States
NICHD NIH HHS · R01 HD057974 · United States
NICHD NIH HHS · 5F33HD055016-02 · United States
NICHD NIH HHS · HD054631 · United States
NICHD NIH HHS · F33 HD055016 · United States
NICHD NIH HHS · R01 HD042563 · United States
NICHD NIH HHS · HD42563 · United States
NIGMS NIH HHS · F32 GM084592 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]