Home LiteratureArticle Details
PMID: 19171782 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress.

Genes & development ·Vol. 23 ·No. 2 ·2009-01-15 ·Pages 208-22

Kang J, Gemberling M, Nakamura M, Whitby FG, Handa H, Fairbrother WG, Tantin D

Abstract

Oct1 and Oct4 are homologous transcription factors with similar DNA-binding specificities. Here we show that Oct1 is dynamically phosphorylated in vivo following exposure of cells to oxidative and genotoxic stress. We further show that stress regulates the selectivity of both proteins for specific DNA sequences. Mutation of conserved phosphorylation target DNA-binding domain residues in Oct1, and Oct4 confirms their role in regulating binding selectivity. Using chromatin immunoprecipitation, we show that association of Oct4 and Oct1 with a distinct group of in vivo targets is inducible by stress, and that Oct1 is essential for a normal post-stress transcriptional response. Finally, using an unbiased Oct1 target screen we identify a large number of genes targeted by Oct1 specifically under conditions of stress, and show that several of these inducible Oct1 targets are also inducibly bound by Oct4 in embryonic stem cells following stress exposure.

MeSH Terms
Amino Acid Sequence Animals DNA Damage/physiology Dimerization Gene Expression Regulation HeLa Cells Humans Inverted Repeat Sequences/genetics Mice Models, Molecular Molecular Sequence Data Mutation Octamer Transcription Factor-1/chemistry,genetics,metabolism Octamer Transcription Factor-3/chemistry,genetics,metabolism Oxidative Stress/physiology Phosphorylation Protein Binding Protein Structure, Tertiary
Chemicals
Octamer Transcription Factor-1 Octamer Transcription Factor-3
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Kang Jinsuk
Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.
Gemberling Matthew
Nakamura Mitsuhiro
Whitby Frank G
Handa Hiroshi
Fairbrother William G
Tantin Dean
References (60)
60 references, click to expand
  1. Generation of germline-competent induced pluripotent stem cells.
    Nature. 2007 Jul 19;448(7151):313-7 PMID: 17554338
  2. Transcriptional regulation of the human osteopontin promoter: functional analysis and DNA-protein interactions.
    Oncogene. 2000 Nov 23;19(50):5801-9 PMID: 11126367
  3. Oct-1 is involved in the transcriptional repression of the p15(INK4b) gene.
    FEBS Lett. 2007 Mar 20;581(6):1087-92 PMID: 17316622
  4. New POU dimer configuration mediates antagonistic control of an osteopontin preimplantation enhancer by Oct-4 and Sox-2.
    Genes Dev. 1998 Jul 1;12(13):2073-90 PMID: 9649510
  5. Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell. 2005 Sep 23;122(6):947-56 PMID: 16153702
  6. Ectopic expression of Oct-4 blocks progenitor-cell differentiation and causes dysplasia in epithelial tissues.
    Cell. 2005 May 6;121(3):465-77 PMID: 15882627
  7. En masse nascent transcription analysis to elucidate regulatory transcription factors.
    Nucleic Acids Res. 2006 Mar 15;34(5):1492-500 PMID: 16540593
  8. S phase activation of the histone H2B promoter by OCA-S, a coactivator complex that contains GAPDH as a key component.
    Cell. 2003 Jul 25;114(2):255-66 PMID: 12887926
  9. Oct-3/4 is a dose-dependent oncogenic fate determinant.
    Cancer Cell. 2003 Nov;4(5):361-70 PMID: 14667503
  10. Involvement of the Oct-1 regulatory element of the gadd45 promoter in the p53-independent response to ultraviolet irradiation.
    Cancer Res. 2001 Feb 1;61(3):1187-95 PMID: 11221850
  11. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells.
    Nat Genet. 2006 Apr;38(4):431-40 PMID: 16518401
  12. Oct transcription factors mediate t(14;18) lymphoma cell survival by directly regulating bcl-2 expression.
    Oncogene. 2006 Feb 9;25(6):888-98 PMID: 16186795
  13. Differential dimer activities of the transcription factor Oct-1 by DNA-induced interface swapping.
    Mol Cell. 2001 Sep;8(3):569-80 PMID: 11583619
  14. HIF-2alpha regulates Oct-4: effects of hypoxia on stem cell function, embryonic development, and tumor growth.
    Genes Dev. 2006 Mar 1;20(5):557-70 PMID: 16510872
  15. Epigenetic silencing of the immunoglobulin heavy-chain gene in classical Hodgkin lymphoma-derived cell lines contributes to the loss of immunoglobulin expression.
    Blood. 2004 Nov 15;104(10):3326-34 PMID: 15284123
  16. Multiple sequence elements are required for maximal in vitro transcription of a human histone H2B gene.
    Mol Cell Biol. 1986 Oct;6(10):3329-40 PMID: 3025588
  17. Low pH induces co-ordinate regulation of gene expression in oesophageal cells.
    Carcinogenesis. 2006 Feb;27(2):319-27 PMID: 16113055
  18. Cloning and characterization of a novel gene PDRG that is differentially regulated by p53 and ultraviolet radiation.
    Oncogene. 2003 Oct 16;22(46):7247-57 PMID: 14562055
  19. High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes.
    Genome Res. 2008 Apr;18(4):631-9 PMID: 18212089
  20. OCT-1 is over-expressed in intestinal metaplasia and intestinal gastric carcinomas and binds to, but does not transactivate, CDX2 in gastric cells.
    J Pathol. 2005 Dec;207(4):396-401 PMID: 16278805
  21. A T cell-specific enhancer in the interleukin-3 locus is activated cooperatively by Oct and NFAT elements within a DNase I-hypersensitive site.
    Immunity. 1997 Feb;6(2):175-85 PMID: 9047239
  22. Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.
    Nat Biotechnol. 2008 Jan;26(1):101-6 PMID: 18059259
  23. The binding of Ku antigen to homeodomain proteins promotes their phosphorylation by DNA-dependent protein kinase.
    J Biol Chem. 2001 May 18;276(20):16848-56 PMID: 11279128
  24. Octamer factors exert a dual effect on the IL-2 and IL-4 promoters.
    J Immunol. 1994 Dec 15;153(12):5572-85 PMID: 7989759
  25. High-performance affinity beads for identifying drug receptors.
    Nat Biotechnol. 2000 Aug;18(8):877-81 PMID: 10932159
  26. A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory.
    EMBO J. 2006 Mar 8;25(5):1081-92 PMID: 16498406
  27. Transcription profiling of lung adenocarcinomas of c-myc-transgenic mice: identification of the c-myc regulatory gene network.
    BMC Syst Biol. 2008 May 22;2:46 PMID: 18498649
  28. Transformation by homeobox genes can be mediated by selective transcriptional repression.
    EMBO J. 1994 Dec 15;13(24):5967-76 PMID: 7813434
  29. The octamer binding transcription factor Oct-1 is a stress sensor.
    Cancer Res. 2005 Dec 1;65(23):10750-8 PMID: 16322220
  30. Octamer-binding proteins from B or HeLa cells stimulate transcription of the immunoglobulin heavy-chain promoter in vitro.
    Genes Dev. 1988 Oct;2(10):1227-37 PMID: 3264542
  31. BRCA1 regulates GADD45 through its interactions with the OCT-1 and CAAT motifs.
    J Biol Chem. 2002 Mar 8;277(10):8061-7 PMID: 11777930
  32. B cell development and immunoglobulin transcription in Oct-1-deficient mice.
    Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):2005-10 PMID: 14762167
  33. Regulation of immunoglobulin promoter activity by TFII-I class transcription factors.
    J Biol Chem. 2004 Feb 13;279(7):5460-9 PMID: 14645227
  34. Interaction of Oct-1 and automodification domain of poly(ADP-ribose) synthetase.
    FEBS Lett. 1998 Mar 6;424(1-2):27-32 PMID: 9537509
  35. Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration.
    Cell. 2000 Dec 8;103(6):853-64 PMID: 11136971
  36. Triptolide, an active component of the Chinese herbal remedy Tripterygium wilfordii Hook F, inhibits production of nitric oxide by decreasing inducible nitric oxide synthase gene transcription.
    Arthritis Rheum. 2004 Sep;50(9):2995-303 PMID: 15457469
  37. Coexamination of site-specific transcription factor binding and promoter activity in living cells.
    Mol Cell Biol. 1999 Dec;19(12):8393-9 PMID: 10567564
  38. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.
    Cell. 2008 Jun 13;133(6):1106-17 PMID: 18555785
  39. Mitotic phosphorylation of the Oct-1 homeodomain and regulation of Oct-1 DNA binding activity.
    Science. 1991 Dec 20;254(5039):1814-6 PMID: 1684878
  40. Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors.
    Mol Cell Biol. 1994 Mar;14(3):2159-69 PMID: 8114746
  41. Embryonic lethality, decreased erythropoiesis, and defective octamer-dependent promoter activation in Oct-1-deficient mice.
    Mol Cell Biol. 2004 Feb;24(3):1022-32 PMID: 14729950
  42. Activation of the transcription factor Oct-1 in response to DNA damage.
    Cancer Res. 2000 Nov 15;60(22):6276-80 PMID: 11103783
  43. Differential effects of phosphorylation on DNA binding properties of N Oct-3 are dictated by protein/DNA complex structures.
    J Mol Biol. 2007 Jul 20;370(4):687-700 PMID: 17543985
  44. Regulation of basal and induced expression of C-reactive protein through an overlapping element for OCT-1 and NF-kappaB on the proximal promoter.
    J Immunol. 2005 Sep 1;175(5):3386-90 PMID: 16116232
  45. Oct-1 and CCAAT/enhancer-binding protein (C/EBP) bind to overlapping elements within the interleukin-8 promoter. The role of Oct-1 as a transcriptional repressor.
    J Biol Chem. 1997 Jan 24;272(4):2396-403 PMID: 8999951
  46. Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
    Cell. 2007 Nov 30;131(5):861-72 PMID: 18035408
  47. The POU domain: a large conserved region in the mammalian pit-1, oct-1, oct-2, and Caenorhabditis elegans unc-86 gene products.
    Genes Dev. 1988 Dec;2(12A):1513-6 PMID: 3215510
  48. DNA-PK phosphorylation sites on Oct-1 promote cell survival following DNA damage.
    Oncogene. 2007 Jun 7;26(27):3980-8 PMID: 17213819
  49. POU domain family values: flexibility, partnerships, and developmental codes.
    Genes Dev. 1997 May 15;11(10):1207-25 PMID: 9171367
  50. Development of novel magnetic nano-carriers for high-performance affinity purification.
    Colloids Surf B Biointerfaces. 2008 Jul 15;64(2):162-9 PMID: 18313904
  51. Octamer motif is required for the NF-kappaB-mediated induction of the inducible nitric oxide synthase gene expression in RAW 264.7 macrophages.
    Mol Cells. 1999 Feb 28;9(1):99-109 PMID: 10102579
  52. STAT5 and Oct-1 form a stable complex that modulates cyclin D1 expression.
    Mol Cell Biol. 2003 Dec;23(24):8934-45 PMID: 14645506
  53. Heat shock treatment suppresses angiotensin II-induced SP-1 and AP-1 and stimulates Oct-1 DNA-binding activity in heart.
    Inflamm Res. 2005 Aug;54(8):338-43 PMID: 16158334
  54. Ionizing radiation stimulates octamer factor DNA binding activity in human carcinoma cells.
    Mol Cell Biochem. 1999 Sep;199(1-2):209-15 PMID: 10544969
  55. Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data.
    BMC Genomics. 2008 Jun 03;9:269 PMID: 18522731
  56. Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules.
    Cell. 1994 Apr 8;77(1):21-32 PMID: 8156594
  57. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription.
    Cell. 2000 Dec 8;103(6):843-52 PMID: 11136970
  58. A requirement for breast-cancer-associated gene 1 (BRCA1) in the spindle checkpoint.
    Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17108-13 PMID: 15563594
  59. Cadmium, cobalt and lead cause stress response, cell cycle deregulation and increased steroid as well as xenobiotic metabolism in primary normal human bronchial epithelial cells which is coordinated by at least nine transcription factors.
    Arch Toxicol. 2008 Aug;82(8):513-24 PMID: 18654764
  60. Examination of POU homeobox gene expression in human breast cancer cells.
    Int J Cancer. 1999 Mar 31;81(1):104-12 PMID: 10077160
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
1549-5477
Published
2009-01-15
Pages
208-22
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC2648538
Subset
IM
Grants
NCI NIH HHS · P30 CA042014 · United States
NCI NIH HHS · P30CA042014 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]