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PMID: 19633095 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A System for Information Management in BioMedical Studies--SIMBioMS.

Bioinformatics (Oxford, England) ·Vol. 25 ·No. 20 ·2009-10-15 ·Pages 2768-9

Krestyaninova M, Zarins A, Viksna J, Kurbatova N, Rucevskis P, Neogi SG, Gostev M, Perheentupa T, Knuuttila J, Barrett A, Lappalainen I, Rung J, Podnieks K, Sarkans U, McCarthy MI, Brazma A

Abstract

SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented. The source code, documentation and initialization scripts are available at http://simbioms.org.

MeSH Terms
Computational Biology/methods Database Management Systems Databases, Factual Information Management/methods Information Storage and Retrieval/methods Software
Authors & Affiliations
16 authors, click to expand affiliations / ORCID
Krestyaninova Maria
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB101SD, UK. [email protected]
Zarins Andris
Viksna Juris
Kurbatova Natalja
Rucevskis Peteris
Neogi Sudeshna Guha
Gostev Mike
Perheentupa Teemu
Knuuttila Juha
Barrett Amy
Lappalainen Ilkka
Rung Johan
Podnieks Karlis
Sarkans Ugis
McCarthy Mark I
Brazma Alvis
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2009-10-15
Epub
2009-00-24
Pages
2768-9
Language
English
Region
England
NLM ID
9808944
PMCID
PMC2759553
Subset
IM
Grants
Medical Research Council · G0800681 · United Kingdom
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