Home LiteratureArticle Details
PMID: 1996094 Published · ppublish English Comparative Study Journal Article

p68 RNA helicase: identification of a nucleolar form and cloning of related genes containing a conserved intron in yeasts.

Molecular and cellular biology ·Vol. 11 ·No. 3 ·1991-03-00 ·Pages 1326-33

Iggo RD, Jamieson DJ, MacNeill SA, Southgate J, McPheat J, Lane DP

Abstract

The human p68 protein is an RNA-dependent ATPase and RNA helicase which was first identified because of its immunological cross-reaction with a viral RNA helicase, simian virus 40 large T antigen. It belongs to a recently discovered family of proteins (DEAD box proteins) that share extensive regions of amino acid sequence homology, are ubiquitous in living organisms, and are involved in many aspects of RNA metabolism, including splicing, translation, and ribosome assembly. We have shown by immunofluorescent microscopy that mammalian p68, which is excluded from the nucleoli during interphase, translocates to prenucleolar bodies during telophase. We have cloned 55% identical genes from both Schizosaccharomyces pombe and Saccharomyces cerevisiae and shown that they are essential in both yeasts. The human and yeast genes contain a large intron whose position has been precisely conserved. In S. cerevisiae, the intron is unusual both because of its size and because of its location near the 3' end of the gene. We discuss possible functional roles for such an unusual intron in an RNA helicase gene.

Related Genes
MeSH Terms
Amino Acid Sequence Base Sequence Cell Compartmentation Cell Cycle Cell Nucleolus/enzymology Cloning, Molecular Codon Fluorescent Antibody Technique Genes, Fungal Humans Introns Molecular Sequence Data Molecular Weight Multigene Family RNA Helicases RNA Nucleotidyltransferases/genetics Saccharomyces cerevisiae/genetics Schizosaccharomyces/genetics Sequence Homology, Nucleic Acid
Chemicals
Codon RNA Nucleotidyltransferases RNA Helicases
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Iggo R D
Molecular Immunochemistry Laboratory, Imperial Cancer Research Fund Clare Hall Laboratories, South Mimms, Herts, United Kingdom.
Jamieson D J
MacNeill S A
Southgate J
McPheat J
Lane D P
References (49)
49 references, click to expand
  1. SV40 large T shares an antigenic determinant with a cellular protein of molecular weight 68,000.
    Nature. 1980 Nov 13;288(5787):167-70 PMID: 6159551
  2. Pseudogenes in yeast?
    Cell. 1987 Apr 10;49(1):5-6 PMID: 3549000
  3. Recognition of protein coding regions in DNA sequences.
    Nucleic Acids Res. 1982 Sep 11;10(17):5303-18 PMID: 7145702
  4. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  5. Localization of nucleolar phosphoproteins B23 and C23 during mitosis.
    Exp Cell Res. 1983 Jun;146(1):139-49 PMID: 6345184
  6. One-step gene disruption in yeast.
    Methods Enzymol. 1983;101:202-11 PMID: 6310324
  7. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  8. The yeast MATa1 gene contains two introns.
    EMBO J. 1984 May;3(5):1061-5 PMID: 6329735
  9. Silver staining, immunofluorescence, and immunoelectron microscopic localization of nucleolar phosphoproteins B23 and C23.
    Chromosoma. 1984;90(2):139-48 PMID: 6206987
  10. Nucleolin, the major nucleolar protein of growing eukaryotic cells: an unusual protein structure revealed by the nucleotide sequence.
    Proc Natl Acad Sci U S A. 1987 Mar;84(6):1472-6 PMID: 3470736
  11. RNA binding fragments from nucleolin contain the ribonucleoprotein consensus sequence.
    J Biol Chem. 1987 Aug 15;262(23):10922-5 PMID: 2440879
  12. Saccharomyces cerevisiae SSB1 protein and its relationship to nucleolar RNA-binding proteins.
    Mol Cell Biol. 1987 Aug;7(8):2947-55 PMID: 2823109
  13. Premature translation termination mediates triosephosphate isomerase mRNA degradation.
    Mol Cell Biol. 1988 Feb;8(2):802-13 PMID: 2832737
  14. A role for the nuclear envelope in controlling DNA replication within the cell cycle.
    Nature. 1988 Apr 7;332(6164):546-8 PMID: 3357511
  15. Nuclear protein with sequence homology to translation initiation factor eIF-4A.
    Nature. 1988 Apr 21;332(6166):736-8 PMID: 2451786
  16. A new superfamily of replicative proteins.
    Nature. 1988 May 5;333(6168):22-3 PMID: 3362205
  17. The evolutionary conservation of DNA polymerase alpha.
    Nucleic Acids Res. 1988 Aug 25;16(16):7961-73 PMID: 2458565
  18. Sequence requirements for nucleolar localization of human T cell leukemia virus type I pX protein, which regulates viral RNA processing.
    Cell. 1988 Oct 21;55(2):197-209 PMID: 3048703
  19. The product of the Drosophila gene vasa is very similar to eukaryotic initiation factor-4A.
    Nature. 1988 Oct 13;335(6191):611-7 PMID: 3140040
  20. A protein component of Drosophila polar granules is encoded by vasa and has extensive sequence similarity to ATP-dependent helicases.
    Cell. 1988 Nov 18;55(4):577-87 PMID: 3052853
  21. Mitochondrial splicing requires a protein from a novel helicase family.
    Nature. 1989 Jan 5;337(6202):84-7 PMID: 2535893
  22. Birth of the D-E-A-D box.
    Nature. 1989 Jan 12;337(6203):121-2 PMID: 2563148
  23. Major nucleolar proteins shuttle between nucleus and cytoplasm.
    Cell. 1989 Feb 10;56(3):379-90 PMID: 2914325
  24. Site-specific DNA endonuclease and RNA maturase activities of two homologous intron-encoded proteins from yeast mitochondria.
    Cell. 1989 Feb 10;56(3):431-41 PMID: 2536593
  25. An essential yeast protein, encoded by duplicated genes TIF1 and TIF2 and homologous to the mammalian translation initiation factor eIF-4A, can suppress a mitochondrial missense mutation.
    Proc Natl Acad Sci U S A. 1989 Apr;86(7):2286-90 PMID: 2648398
  26. RNA-binding proteins as developmental regulators.
    Genes Dev. 1989 Apr;3(4):431-7 PMID: 2470643
  27. Introduction of functional artificial introns into the naturally intronless ura4 gene of Schizosaccharomyces pombe.
    Mol Cell Biol. 1989 Apr;9(4):1526-35 PMID: 2725514
  28. RNA helicase activity associated with the human p68 protein.
    Nature. 1989 Jun 15;339(6225):562-4 PMID: 2471939
  29. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.
    Nucleic Acids Res. 1989 Jun 26;17(12):4713-30 PMID: 2546125
  30. Synthesis of ribosomes in Saccharomyces cerevisiae.
    Microbiol Rev. 1989 Jun;53(2):256-71 PMID: 2666845
  31. Nuclear protein p68 is an RNA-dependent ATPase.
    EMBO J. 1989 Jun;8(6):1827-31 PMID: 2527746
  32. Nuclear and nucleolar targeting sequences of c-erb-A, c-myb, N-myc, p53, HSP70, and HIV tat proteins.
    J Biol Chem. 1989 Oct 25;264(30):18019-23 PMID: 2553699
  33. A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability.
    EMBO J. 1989 Dec 20;8(13):4015-24 PMID: 2686980
  34. Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F.
    Mol Cell Biol. 1990 Mar;10(3):1134-44 PMID: 2304461
  35. Identification of five putative yeast RNA helicase genes.
    Proc Natl Acad Sci U S A. 1990 Feb;87(4):1571-5 PMID: 2406722
  36. Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46.
    Science. 1990 Mar 2;247(4946):1077-9 PMID: 2408148
  37. PRP5: a helicase-like protein required for mRNA splicing in yeast.
    Proc Natl Acad Sci U S A. 1990 Jun;87(11):4236-40 PMID: 2349233
  38. Monoclonal antibody analysis of the proliferating cell nuclear antigen (PCNA). Structural conservation and the detection of a nucleolar form.
    J Cell Sci. 1990 May;96 ( Pt 1):121-9 PMID: 1695635
  39. The nucleolus and ribosome formation.
    Curr Opin Cell Biol. 1990 Jun;2(3):521-7 PMID: 2198902
  40. Translation to near the distal end of the penultimate exon is required for normal levels of spliced triosephosphate isomerase mRNA.
    Mol Cell Biol. 1990 Oct;10(10):5215-25 PMID: 2398889
  41. A novel RNA helicase gene tightly linked to the Triplo-lethal locus of Drosophila.
    Nucleic Acids Res. 1990 Sep 25;18(18):5489-94 PMID: 2170937
  42. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe.
    Methods Enzymol. 1991;194:795-823 PMID: 2005825
  43. Structure and organization of two linked ribosomal protein genes in yeast.
    Nucleic Acids Res. 1984 Oct 11;12(19):7345-58 PMID: 6387623
  44. Mitochondrial class II introns encode proteins related to the reverse transcriptases of retroviruses.
    Nature. 1985 Aug 15-21;316(6029):641-3 PMID: 2412125
  45. Nucleologenesis: composition and fate of prenucleolar bodies.
    Chromosoma. 1985;92(5):330-6 PMID: 3902398
  46. Structure of rodent helix-destabilizing protein revealed by cDNA cloning.
    J Biol Chem. 1986 Mar 15;261(8):3536-43 PMID: 3005291
  47. Schizosaccharomyces pombe and Saccharomyces cerevisiae: a look at yeasts divided.
    Cell. 1986 Jun 20;45(6):781-2 PMID: 3518949
  48. On the antiquity of introns.
    Cell. 1986 Jul 18;46(2):151-3 PMID: 2424613
  49. Identification of a nuclear and of a cytoplasmic polypeptide whose relative proportions are sensitive to changes in the rate of cell proliferation.
    Exp Cell Res. 1981 Dec;136(2):311-9 PMID: 7308310
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1991-03-00
Pages
1326-33
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC369403
Subset
IM
Databases
GENBANK
M35697, M35698, M35699, M35700, M73693, M73694, M73695, X15729, X52648, X52649
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]