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PMID: 20064376 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells.

Cell ·Vol. 139 ·No. 7 ·2009-12-24 ·Pages 1303-14

Shen X, Kim W, Fujiwara Y, Simon MD, Liu Y, Mysliwiec MR, Yuan GC, Lee Y, Orkin SH

Abstract

Trimethylation on histone H3 lysine 27 (H3K27me3) by Polycomb repressive complex 2 (PRC2) regulates the balance between self-renewal and differentiation of embryonic stem cells (ESCs). The mechanisms controlling the activity and recruitment of PRC2 are largely unknown. Here we demonstrate that the founding member of the Jumonji family, JMJ (JUMONJI or JARID2), is associated with PRC2, colocalizes with PRC2 and H3K27me3 on chromatin, and modulates PRC2 function. In vitro JMJ inhibits PRC2 methyltransferase activity, consistent with increased H3K27me3 marks at PRC2 targets in Jmj(-/-) ESCs. Paradoxically, JMJ is required for efficient binding of PRC2, indicating that the interplay of PRC2 and JMJ fine-tunes deposition of the H3K27me3 mark. During differentiation, activation of genes marked by H3K27me3 and lineage commitments are delayed in Jmj(-/-) ESCs. Our results demonstrate that dynamic regulation of Polycomb complex activity orchestrated by JMJ balances self-renewal and differentiation, highlighting the involvement of chromatin dynamics in cell-fate transitions.

MeSH Terms
Animals Cell Differentiation Chromatin Assembly and Disassembly Embryonic Stem Cells/cytology HeLa Cells Histone-Lysine N-Methyltransferase/metabolism Histones/metabolism Humans Mice Nerve Tissue Proteins/metabolism Polycomb Repressive Complex 2 Polycomb-Group Proteins Repressor Proteins/metabolism
Chemicals
Histones Jarid2 protein, mouse Nerve Tissue Proteins Polycomb-Group Proteins Repressor Proteins Histone-Lysine N-Methyltransferase Polycomb Repressive Complex 2
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Shen Xiaohua
Department of Pediatric Oncology, Dana-Farber Cancer Institute, Children's Hospital, and Harvard Medical School, Boston, MA 02115, USA.
Kim Woojin
Fujiwara Yuko
Simon Matthew D
Liu Yingchun
Mysliwiec Matthew R
Yuan Guo-Cheng
Lee Youngsook
Orkin Stuart H
References (47)
47 references, click to expand
  1. A gene regulatory network in mouse embryonic stem cells.
    Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16438-43 PMID: 17940043
  2. Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells.
    Genes Dev. 2008 Mar 15;22(6):746-55 PMID: 18347094
  3. Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation.
    Mol Cell. 2008 Aug 22;31(4):520-530 PMID: 18722178
  4. An extended transcriptional network for pluripotency of embryonic stem cells.
    Cell. 2008 Mar 21;132(6):1049-61 PMID: 18358816
  5. EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency.
    Mol Cell. 2008 Nov 21;32(4):491-502 PMID: 19026780
  6. Regulation of cyclin D1 RNA stability by SNIP1.
    Cancer Res. 2008 Sep 15;68(18):7621-8 PMID: 18794151
  7. Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer.
    Nat Genet. 2009 May;41(5):521-3 PMID: 19330029
  8. A jumonji (Jarid2) protein complex represses cyclin D1 expression by methylation of histone H3-K9.
    J Biol Chem. 2009 Jan 9;284(2):733-9 PMID: 19010785
  9. JUMONJI, a critical factor for cardiac development, functions as a transcriptional repressor.
    J Biol Chem. 2003 Oct 24;278(43):42247-55 PMID: 12890668
  10. The site-specific installation of methyl-lysine analogs into recombinant histones.
    Cell. 2007 Mar 9;128(5):1003-12 PMID: 17350582
  11. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.
    Cell. 2008 Jun 13;133(6):1106-17 PMID: 18555785
  12. Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth.
    Mol Cell Biol. 2007 Mar;27(5):1889-903 PMID: 17178841
  13. Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes.
    EMBO J. 2007 Sep 19;26(18):4078-88 PMID: 17762866
  14. The polycomb group protein Suz12 is required for embryonic stem cell differentiation.
    Mol Cell Biol. 2007 May;27(10):3769-79 PMID: 17339329
  15. Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo.
    Mol Cell Biol. 2008 Apr;28(8):2718-31 PMID: 18285464
  16. Genome-wide reprogramming in hybrids of somatic cells and embryonic stem cells.
    Stem Cells. 2007 May;25(5):1104-13 PMID: 17272499
  17. Recruitment of Drosophila Polycomb-group proteins by Polycomblike, a component of a novel protein complex in larvae.
    Development. 2008 Mar;135(5):813-7 PMID: 18216170
  18. Chromatin modifications and their function.
    Cell. 2007 Feb 23;128(4):693-705 PMID: 17320507
  19. Ndy1/KDM2B immortalizes mouse embryonic fibroblasts by repressing the Ink4a/Arf locus.
    Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2641-6 PMID: 19202064
  20. GenePattern 2.0.
    Nat Genet. 2006 May;38(5):500-1 PMID: 16642009
  21. Roles of JUMONJI in mouse embryonic development.
    Dev Dyn. 2005 Jan;232(1):21-32 PMID: 15580614
  22. Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination.
    Science. 2007 Oct 19;318(5849):447-50 PMID: 17761849
  23. Role of hPHF1 in H3K27 methylation and Hox gene silencing.
    Mol Cell Biol. 2008 Mar;28(5):1862-72 PMID: 18086877
  24. Roles of jumonji and jumonji family genes in chromatin regulation and development.
    Dev Dyn. 2006 Sep;235(9):2449-59 PMID: 16715513
  25. The murine polycomb group protein Eed is required for global histone H3 lysine-27 methylation.
    Curr Biol. 2005 May 24;15(10):942-7 PMID: 15916951
  26. DAVID: Database for Annotation, Visualization, and Integrated Discovery.
    Genome Biol. 2003;4(5):P3 PMID: 12734009
  27. Generation of a conditional null allele of jumonji.
    Genesis. 2006 Sep;44(9):407-11 PMID: 16900512
  28. The histone H3 lysine-27 demethylase Jmjd3 links inflammation to inhibition of polycomb-mediated gene silencing.
    Cell. 2007 Sep 21;130(6):1083-94 PMID: 17825402
  29. Composition and histone substrates of polycomb repressive group complexes change during cellular differentiation.
    Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1859-64 PMID: 15684044
  30. Brief expression of a GFP cre fusion gene in embryonic stem cells allows rapid retrieval of site-specific genomic deletions.
    Nucleic Acids Res. 1997 Aug 15;25(16):3326-31 PMID: 9241248
  31. The co-repressor hairless has a role in epithelial cell differentiation in the skin.
    Development. 2004 Sep;131(17):4189-200 PMID: 15280217
  32. Developmental roles of the histone lysine demethylases.
    Development. 2009 Mar;136(6):879-89 PMID: 19234061
  33. Global transcription in pluripotent embryonic stem cells.
    Cell Stem Cell. 2008 May 8;2(5):437-47 PMID: 18462694
  34. A protein interaction network for pluripotency of embryonic stem cells.
    Nature. 2006 Nov 16;444(7117):364-8 PMID: 17093407
  35. Coordinated regulation of transcriptional repression by the RBP2 H3K4 demethylase and Polycomb-Repressive Complex 2.
    Genes Dev. 2008 May 15;22(10):1345-55 PMID: 18483221
  36. PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation.
    Mol Cell. 2007 Mar 23;25(6):801-12 PMID: 17363312
  37. Prediction and testing of novel transcriptional networks regulating embryonic stem cell self-renewal and commitment.
    Cell Stem Cell. 2007 Jun 7;1(1):71-86 PMID: 18371337
  38. Polycomb complexes repress developmental regulators in murine embryonic stem cells.
    Nature. 2006 May 18;441(7091):349-53 PMID: 16625203
  39. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.
    Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):31-6 PMID: 11134512
  40. Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease.
    Genes Dev. 2008 May 1;22(9):1115-40 PMID: 18451103
  41. Site-specific analysis of histone methylation and acetylation.
    Methods Mol Biol. 2004;287:99-120 PMID: 15273407
  42. Nanog safeguards pluripotency and mediates germline development.
    Nature. 2007 Dec 20;450(7173):1230-4 PMID: 18097409
  43. Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62 PMID: 16895995
  44. The Drosophila jumonji gene encodes a JmjC-containing nuclear protein that is required for metamorphosis.
    FEBS J. 2007 Dec;274(23):6139-51 PMID: 17970746
  45. Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms.
    Mol Cell. 2008 Nov 21;32(4):503-18 PMID: 19026781
  46. Dissecting direct reprogramming through integrative genomic analysis.
    Nature. 2008 Jul 3;454(7200):49-55 PMID: 18509334
  47. Regulation of histone methylation by demethylimination and demethylation.
    Nat Rev Mol Cell Biol. 2007 Apr;8(4):307-18 PMID: 17342184
Article Info
Journal
Cell
Abbr.
Cell
ISSN
1097-4172
Published
2009-12-24
Pages
1303-14
Language
English
Region
United States
NLM ID
0413066
PMCID
PMC2810107
Subset
IM
Grants
Howard Hughes Medical Institute · United States
NIDDK NIH HHS · P30 DK049216 · United States
NIDDK NIH HHS · P30 DK049216-16 · United States
NHLBI NIH HHS · HL67050 · United States
Databases
GEO
Analysis Services
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