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PMID: 20482635 Published · ppublish English Journal Article Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

Insect molecular biology ·Vol. 19 Suppl 2 ·2010-03-00 ·Pages 5-12

Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson AC, Murphy T, Tagu D

Abstract

AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at http://www.aphidbase.com.

MeSH Terms
Animals Aphids/genetics,pathogenicity Computational Biology Databases, Genetic Genome, Insect Peas/parasitology Software
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Legeai F
INRA UMR, Le Rheu, France. [email protected] <[email protected]>
Shigenobu S
Gauthier J-P
Colbourne J
Rispe C
Collin O
Richards S
Wilson A C C
Murphy T
Tagu D
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Article Info
Journal
Insect molecular biology
Abbr.
Insect Mol Biol
ISSN
1365-2583
DOI
10.1111/j.1365-2583.2009.00930.x
Email
[email protected]
Published
2010-03-00
Pages
5-12
Language
English
Region
England
NLM ID
9303579
PMCID
PMC4372297
Subset
IM
Grants
NHGRI NIH HHS · U54 HG003273 · United States
Intramural NIH HHS · United States
External Links
PubMed source DOI: 10.1111/j.1365-2583.2009.00930.x PMC Full Text View journal details
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