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PMID: 204911 Published · ppublish English Journal Article

Base-specific reactions useful for DNA sequencing: methylene blue--sensitized photooxidation of guanine and osmium tetraoxide modification of thymine.

Nucleic acids research ·Vol. 5 ·No. 2 ·1978-02-00 ·Pages 615-22

Friedmann T, Brown DM

Abstract

Exposure of DNA to methylene blue and visible or ultraviolet light causes guanine-specific modification, and subsequent treatment with piperidine leads to chain cleavage at each guanine residue. Treatment of DNA with osmium tetraoxide in dilute pyridine leads to thymidine-specific modification, and subsequent treatment with piperidine leads to chain cleavage at the modified thymidine residues. Both reactions can be used in conjunction with other base specific modifications described by Maxam and Gilbert (1) for the determination of the nucleotide sequence in DNA.

MeSH Terms
Base Sequence DNA DNA, Viral Guanine Methylene Blue Osmium Oxidation-Reduction Photochemistry Polyomavirus
Chemicals
DNA, Viral Osmium Guanine DNA Methylene Blue
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Friedmann T
Brown D M
References (10)
10 references, click to expand
  1. PHOTOSENSITIZED REACTION OF POLYRIBONUCLEOTIDES. I. EFFECTS ON THEIR SUSCEPTIBILITY TO ENZYME DIGESTION AND THEIR ABILITY TO ACT AS SYNTHETIC MESSENGERS.
    J Mol Biol. 1965 May;12:50-9 PMID: 14343296
  2. THE DYE-SENSITIZED PHOTOOXIDATION OF PURINE AND PYRIMIDINE DERIVATIVES.
    Arch Biochem Biophys. 1964 Apr;105:197-206 PMID: 14165495
  3. The photodynamic reaction of methylene blue with deoxyribonucleic acid.
    J Mol Biol. 1962 Jun;4:488-99 PMID: 13913131
  4. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  5. Structure and function of Escherichia coli formylmethionine transfer RNA: loss of methionine acceptor activity by modification of a specific guanosine residue in the acceptor stem of formylmethionine transfer RNA from Escherichia coli.
    Proc Natl Acad Sci U S A. 1972 Dec;69(12):3594-7 PMID: 4566450
  6. A comparative study of photodynamic oxidation and radiofrequency-discharge-generated 1O2 oxidation of guanosine.
    Photochem Photobiol. 1973 Jul;18(1):63-9 PMID: 4744139
  7. Reactivity of purine and pyrimidine bases toward singlet oxygen.
    Biophys J. 1971 Nov;11(11):963-6 PMID: 5113006
  8. Reactions between singlet oxygen and the constituents of nucleic acids. Importance of reactions in photodynamic processes.
    Biophys J. 1970 Apr;10(4):305-15 PMID: 5436880
  9. Studies on the photosensitized breakdown of guanosine by methylene blue.
    Biochim Biophys Acta. 1966 Oct 24;129(1):49-53 PMID: 5970075
  10. Selective degradation of thymidine and thymine deoxynucleotides.
    Biochem J. 1966 Jan;98(1):70-7 PMID: 5938667
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1978-02-00
Pages
615-22
Language
English
Region
England
NLM ID
0411011
PMCID
PMC342006
Subset
IM
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