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PMID: 21969679 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Verification of cardiac tissue electrophysiology simulators using an N-version benchmark.

Niederer SA, Kerfoot E, Benson AP, Bernabeu MO, Bernus O, Bradley C, Cherry EM, Clayton R, Fenton FH, Garny A, Heidenreich E, Land S, Maleckar M, Pathmanathan P, Plank G, Rodríguez JF, Roy I, Sachse FB, Seemann G, Skavhaug O, Smith NP

Abstract

Ongoing developments in cardiac modelling have resulted, in particular, in the development of advanced and increasingly complex computational frameworks for simulating cardiac tissue electrophysiology. The goal of these simulations is often to represent the detailed physiology and pathologies of the heart using codes that exploit the computational potential of high-performance computing architectures. These developments have rapidly progressed the simulation capacity of cardiac virtual physiological human style models; however, they have also made it increasingly challenging to verify that a given code provides a faithful representation of the purported governing equations and corresponding solution techniques. This study provides the first cardiac tissue electrophysiology simulation benchmark to allow these codes to be verified. The benchmark was successfully evaluated on 11 simulation platforms to generate a consensus gold-standard converged solution. The benchmark definition in combination with the gold-standard solution can now be used to verify new simulation codes and numerical methods in the future.

MeSH Terms
Algorithms Computational Biology Computer Simulation Computers Electrophysiology/methods Heart/physiology,physiopathology Humans Models, Cardiovascular Models, Theoretical Normal Distribution Software Time Factors
Authors & Affiliations
21 authors, click to expand affiliations / ORCID
Niederer Steven A
Department of Biomedical Engineering, Division of Imaging Sciences and Biomedical Engineering, King's College London, UK. [email protected]
Kerfoot Eric
Benson Alan P
Bernabeu Miguel O
Bernus Olivier
Bradley Chris
Cherry Elizabeth M
Clayton Richard
Fenton Flavio H
Garny Alan
Heidenreich Elvio
Land Sander
Maleckar Mary
Pathmanathan Pras
Plank Gernot
Rodríguez José F
Roy Ishani
Sachse Frank B
Seemann Gunnar
Skavhaug Ola
Smith Nic P
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Article Info
Journal
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
Abbr.
Philos Trans A Math Phys Eng Sci
ISSN
1364-503X
Published
2011-11-13
Pages
4331-51
Language
English
Region
England
NLM ID
101133385
PMCID
PMC3263775
Subset
IM
Grants
Wellcome Trust · United Kingdom
Medical Research Council · G0701776 · United Kingdom
Austrian Science Fund FWF · F 3210 · Austria
NHLBI NIH HHS · 1R01 HL 10119601 · United States
British Heart Foundation · PG/08/019/24600 · United Kingdom
Biotechnology and Biological Sciences Research Council · United Kingdom
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