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PMID: 18603526 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

From mitochondrial ion channels to arrhythmias in the heart: computational techniques to bridge the spatio-temporal scales.

Plank G, Zhou L, Greenstein JL, Cortassa S, Winslow RL, O'Rourke B, Trayanova NA

Abstract

Computer simulations of electrical behaviour in the whole ventricles have become commonplace during the last few years. The goals of this article are (i) to review the techniques that are currently employed to model cardiac electrical activity in the heart, discussing the strengths and weaknesses of the various approaches, and (ii) to implement a novel modelling approach, based on physiological reasoning, that lifts some of the restrictions imposed by current state-of-the-art ionic models. To illustrate the latter approach, the present study uses a recently developed ionic model of the ventricular myocyte that incorporates an excitation-contraction coupling and mitochondrial energetics model. A paradigm to bridge the vastly disparate spatial and temporal scales, from subcellular processes to the entire organ, and from sub-microseconds to minutes, is presented. Achieving sufficient computational efficiency is the key to success in the quest to develop multiscale realistic models that are expected to lead to better understanding of the mechanisms of arrhythmia induction following failure at the organelle level, and ultimately to the development of novel therapeutic applications.

MeSH Terms
Action Potentials Animals Arrhythmias, Cardiac/physiopathology Computer Simulation Heart Conduction System/physiopathology Humans Ion Channel Gating Ion Channels Mitochondria Models, Cardiovascular
Chemicals
Ion Channels
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Plank Gernot
Institute of Biophysics, Medical University Graz, 8010 Graz, Austria.
Zhou Lufang
Greenstein Joseph L
Cortassa Sonia
Winslow Raimond L
O'Rourke Brian
Trayanova Natalia A
References (79)
79 references, click to expand
  1. A comparison of non-standard solvers for ODEs describing cellular reactions in the heart.
    Comput Methods Biomech Biomed Engin. 2007 Oct;10(5):317-26 PMID: 17852182
  2. Revised formulation of the Hodgkin-Huxley representation of the sodium current in cardiac cells.
    Comput Biomed Res. 1987 Aug;20(4):333-50 PMID: 3621918
  3. Modeling the actions of beta-adrenergic signaling on excitation--contraction coupling processes.
    Ann N Y Acad Sci. 2004 May;1015:16-27 PMID: 15201146
  4. A comparison of monodomain and bidomain reaction-diffusion models for action potential propagation in the human heart.
    IEEE Trans Biomed Eng. 2006 Dec;53(12 Pt 1):2425-35 PMID: 17153199
  5. Heterogeneous three-dimensional anatomical and electrophysiological model of human atria.
    Philos Trans A Math Phys Eng Sci. 2006 Jun 15;364(1843):1465-81 PMID: 16766355
  6. Action potential and contractility changes in [Na(+)](i) overloaded cardiac myocytes: a simulation study.
    Biophys J. 2000 May;78(5):2392-404 PMID: 10777735
  7. Spiral waves in two-dimensional models of ventricular muscle: formation of a stationary core.
    Biophys J. 1998 Jul;75(1):1-14 PMID: 9649363
  8. Simulating the electrical behavior of cardiac tissue using the bidomain model.
    Crit Rev Biomed Eng. 1993;21(1):1-77 PMID: 8365198
  9. A computer model of normal conduction in the human atria.
    Circ Res. 2000 Sep 29;87(7):E25-36 PMID: 11009627
  10. A finite volume method for modeling discontinuous electrical activation in cardiac tissue.
    Ann Biomed Eng. 2005 May;33(5):590-602 PMID: 15981860
  11. Efficient integration of a realistic two-dimensional cardiac tissue model by domain decomposition.
    IEEE Trans Biomed Eng. 1998 Mar;45(3):372-85 PMID: 9509753
  12. Defibrillation depends on conductivity fluctuations and the degree of disorganization in reentry patterns.
    J Cardiovasc Electrophysiol. 2005 Feb;16(2):205-16 PMID: 15720461
  13. A model of the ventricular cardiac action potential. Depolarization, repolarization, and their interaction.
    Circ Res. 1991 Jun;68(6):1501-26 PMID: 1709839
  14. Reentry in a morphologically realistic atrial model.
    J Cardiovasc Electrophysiol. 2001 Sep;12(9):1046-54 PMID: 11577703
  15. An integrative model of the cardiac ventricular myocyte incorporating local control of Ca2+ release.
    Biophys J. 2002 Dec;83(6):2918-45 PMID: 12496068
  16. Efficient simulation of three-dimensional anisotropic cardiac tissue using an adaptive mesh refinement method.
    Chaos. 2003 Sep;13(3):853-65 PMID: 12946177
  17. Cell model for efficient simulation of wave propagation in human ventricular tissue under normal and pathological conditions.
    Phys Med Biol. 2006 Dec 7;51(23):6141-56 PMID: 17110776
  18. Computational tools for modeling electrical activity in cardiac tissue.
    J Electrocardiol. 2003;36 Suppl:69-74 PMID: 14716595
  19. Mechanisms of excitation-contraction coupling in an integrative model of the cardiac ventricular myocyte.
    Biophys J. 2006 Jan 1;90(1):77-91 PMID: 16214852
  20. Anode/cathode make and break phenomena in a model of defibrillation.
    IEEE Trans Biomed Eng. 1999 Jul;46(7):769-77 PMID: 10396895
  21. A practical algorithm for solving dynamic membrane equations.
    IEEE Trans Biomed Eng. 1978 Jul;25(4):389-92 PMID: 689699
  22. Cardiac propagation simulation.
    Crit Rev Biomed Eng. 1992;20(3-4):171-210 PMID: 1478091
  23. Tunnel propagation of postshock activations as a hypothesis for fibrillation induction and isoelectric window.
    Circ Res. 2008 Mar 28;102(6):737-45 PMID: 18218982
  24. Solving the cardiac bidomain equations for discontinuous conductivities.
    IEEE Trans Biomed Eng. 2006 Jul;53(7):1265-72 PMID: 16830931
  25. A computational model of the human left-ventricular epicardial myocyte.
    Biophys J. 2004 Sep;87(3):1507-25 PMID: 15345532
  26. An efficient numerical technique for the solution of the monodomain and bidomain equations.
    IEEE Trans Biomed Eng. 2006 Nov;53(11):2139-47 PMID: 17073318
  27. Cardiac Ca2+ dynamics: the roles of ryanodine receptor adaptation and sarcoplasmic reticulum load.
    Biophys J. 1998 Mar;74(3):1149-68 PMID: 9512016
  28. Mechanisms of altered excitation-contraction coupling in canine tachycardia-induced heart failure, II: model studies.
    Circ Res. 1999 Mar 19;84(5):571-86 PMID: 10082479
  29. A simulation study of the effects of cardiac anatomy in ventricular fibrillation.
    J Clin Invest. 2004 Mar;113(5):686-93 PMID: 14991066
  30. A numerically efficient model for simulation of defibrillation in an active bidomain sheet of myocardium.
    Math Biosci. 2000 Jul;166(1):85-100 PMID: 10882801
  31. An operator splitting method for solving the bidomain equations coupled to a volume conductor model for the torso.
    Math Biosci. 2005 Apr;194(2):233-48 PMID: 15854678
  32. Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia.
    Nature. 1999 Aug 5;400(6744):566-9 PMID: 10448858
  33. A computational model integrating electrophysiology, contraction, and mitochondrial bioenergetics in the ventricular myocyte.
    Biophys J. 2006 Aug 15;91(4):1564-89 PMID: 16679365
  34. Study of atrial arrhythmias in a computer model based on magnetic resonance images of human atria.
    Chaos. 2002 Sep;12(3):754-763 PMID: 12779604
  35. Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model.
    Am J Physiol. 1998 Jul;275(1):H301-21 PMID: 9688927
  36. A collocation--Galerkin finite element model of cardiac action potential propagation.
    IEEE Trans Biomed Eng. 1994 Aug;41(8):743-57 PMID: 7927397
  37. A simplified local control model of calcium-induced calcium release in cardiac ventricular myocytes.
    Biophys J. 2004 Dec;87(6):3723-36 PMID: 15465866
  38. Bioelectric sources arising in excitable fibers (ALZA lecture).
    Ann Biomed Eng. 1988;16(6):519-46 PMID: 3067629
  39. Arrhythmogenic consequences of Na+ channel mutations in the transmurally heterogeneous mammalian left ventricle: analysis of the I1768V SCN5A mutation.
    Heart Rhythm. 2007 Jun;4(6):768-78 PMID: 17556201
  40. Physiology driven adaptivity for the numerical solution of the bidomain equations.
    Ann Biomed Eng. 2007 Sep;35(9):1510-20 PMID: 17541825
  41. Success and failure of biphasic shocks: results of bidomain simulations.
    Math Biosci. 2001 Dec;174(2):91-109 PMID: 11730859
  42. Electrical conductivity values used with the bidomain model of cardiac tissue.
    IEEE Trans Biomed Eng. 1997 Apr;44(4):326-8 PMID: 9125816
  43. Impulses and Physiological States in Theoretical Models of Nerve Membrane.
    Biophys J. 1961 Jul;1(6):445-66 PMID: 19431309
  44. Computational techniques for solving the bidomain equations in three dimensions.
    IEEE Trans Biomed Eng. 2002 Nov;49(11):1260-9 PMID: 12450356
  45. The dynamics of cardiac fibrillation.
    Circulation. 2005 Aug 23;112(8):1232-40 PMID: 16116073
  46. Construction of a computer model to investigate sawtooth effects in the Purkinje system.
    IEEE Trans Biomed Eng. 2007 Mar;54(3):389-99 PMID: 17355050
  47. A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates.
    Biophys J. 2008 Jan 15;94(2):392-410 PMID: 18160660
  48. Termination of reentry by a long-lasting AC shock in a slice of canine heart: a computational study.
    J Cardiovasc Electrophysiol. 2002 Dec;13(12):1253-61 PMID: 12521342
  49. Parallel multigrid preconditioner for the cardiac bidomain model.
    IEEE Trans Biomed Eng. 2004 Nov;51(11):1960-8 PMID: 15536898
  50. Shock-induced arrhythmogenesis in the myocardium.
    Chaos. 2002 Sep;12(3):962-972 PMID: 12779620
  51. Rectification of the background potassium current: a determinant of rotor dynamics in ventricular fibrillation.
    Circ Res. 2001 Dec 7;89(12):1216-23 PMID: 11739288
  52. Cholinergic atrial fibrillation in a computer model of a two-dimensional sheet of canine atrial cells with realistic ionic properties.
    Circ Res. 2002 May 17;90(9):E73-87 PMID: 12016272
  53. Vulnerable window for conduction block in a one-dimensional cable of cardiac cells, 1: single extrasystoles.
    Biophys J. 2006 Aug 1;91(3):793-804 PMID: 16679367
  54. A mitochondrial oscillator dependent on reactive oxygen species.
    Biophys J. 2004 Sep;87(3):2060-73 PMID: 15345581
  55. Organization of ventricular fibrillation in the human heart.
    Circ Res. 2007 Jun 22;100(12):e87-101 PMID: 17540975
  56. Computationally efficient model for simulating electrical activity in cardiac tissue with fiber rotation.
    Ann Biomed Eng. 1999 Mar-Apr;27(2):160-70 PMID: 10199692
  57. Effect of tissue anisotropy on extracellular potential fields in canine myocardium in situ.
    Circ Res. 1982 Mar;50(3):342-51 PMID: 7060230
  58. Current injection into a two-dimensional anisotropic bidomain.
    Biophys J. 1989 May;55(5):987-99 PMID: 2720084
  59. A finite volume model of cardiac propagation.
    Ann Biomed Eng. 1997 Mar-Apr;25(2):315-34 PMID: 9084837
  60. Purkinje-muscle reentry as a mechanism of polymorphic ventricular arrhythmias in a 3-dimensional model of the ventricles.
    Circ Res. 1998 Jun 1;82(10):1063-77 PMID: 9622159
  61. A new cable model formulation based on Green's theorem.
    Ann Biomed Eng. 1990;18(1):1-17 PMID: 2306028
  62. Mechanistic inquiry into decrease in probability of defibrillation success with increase in complexity of preshock reentrant activity.
    Am J Physiol Heart Circ Physiol. 2004 Mar;286(3):H909-17 PMID: 14604852
  63. Differences between left and right ventricular chamber geometry affect cardiac vulnerability to electric shocks.
    Circ Res. 2005 Jul 22;97(2):168-75 PMID: 15976315
  64. Algebraic multigrid preconditioner for the cardiac bidomain model.
    IEEE Trans Biomed Eng. 2007 Apr;54(4):585-96 PMID: 17405366
  65. Proarrhythmic consequences of a KCNQ1 AKAP-binding domain mutation: computational models of whole cells and heterogeneous tissue.
    Circ Res. 2004 Dec 10;95(12):1216-24 PMID: 15528464
  66. Directional differences of impulse spread in trabecular muscle from mammalian heart.
    J Physiol. 1976 Feb;255(2):335-46 PMID: 1255523
  67. The mitochondrial origin of postischemic arrhythmias.
    J Clin Invest. 2005 Dec;115(12):3527-35 PMID: 16284648
  68. Modelling of the ventricular conduction system.
    Prog Biophys Mol Biol. 2008 Jan-Apr;96(1-3):152-70 PMID: 17910889
  69. Influence of cardiac fiber orientation on wavefront voltage, conduction velocity, and tissue resistivity in the dog.
    Circ Res. 1979 May;44(5):701-12 PMID: 428066
  70. Synchronized whole cell oscillations in mitochondrial metabolism triggered by a local release of reactive oxygen species in cardiac myocytes.
    J Biol Chem. 2003 Nov 7;278(45):44735-44 PMID: 12930841
  71. Evaluating intramural virtual electrodes in the myocardial wedge preparation: simulations of experimental conditions.
    Biophys J. 2008 Mar 1;94(5):1904-15 PMID: 17993491
  72. Interactions between adjacent fibers in a cardiac muscle bundle.
    Ann Biomed Eng. 1996 Nov-Dec;24(6):662-74 PMID: 8923986
  73. Linear algebraic transformations of the bidomain equations: implications for numerical methods.
    Math Biosci. 1994 Apr;120(2):127-45 PMID: 8204981
  74. Alternans and spiral breakup in a human ventricular tissue model.
    Am J Physiol Heart Circ Physiol. 2006 Sep;291(3):H1088-100 PMID: 16565318
  75. A numerical method for the solution of the bidomain equations in cardiac tissue.
    Chaos. 1998 Mar;8(1):234-241 PMID: 12779724
  76. From pulsus to pulseless: the saga of cardiac alternans.
    Circ Res. 2006 May 26;98(10):1244-53 PMID: 16728670
  77. Impulse propagation in synthetic strands of neonatal cardiac myocytes with genetically reduced levels of connexin43.
    Circ Res. 2003 Jun 13;92(11):1209-16 PMID: 12730095
  78. Solvers for the cardiac bidomain equations.
    Prog Biophys Mol Biol. 2008 Jan-Apr;96(1-3):3-18 PMID: 17900668
  79. Three-dimensional models of individual cardiac histoanatomy: tools and challenges.
    Ann N Y Acad Sci. 2006 Oct;1080:301-19 PMID: 17132791
Article Info
Journal
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
Abbr.
Philos Trans A Math Phys Eng Sci
ISSN
1364-503X
Published
2008-09-28
Pages
3381-409
Language
English
Region
England
NLM ID
101133385
PMCID
PMC2778066
Subset
IM
Grants
NHLBI NIH HHS · R01-HL067322 · United States
NHLBI NIH HHS · P01-HL081427 · United States
NHLBI NIH HHS · R33 HL87345 · United States
Austrian Science Fund FWF · F 3210 · Austria
NHLBI NIH HHS · P01 HL081427-04 · United States
NHLBI NIH HHS · N01HV28180 · United States
NHLBI NIH HHS · R01-HL082729 · United States
NHLBI NIH HHS · R37 HL054598 · United States
NHLBI NIH HHS · R01-HL063195 · United States
NHLBI NIH HHS · N01-HV28180 · United States
NHLBI NIH HHS · R37 HL054598-13 · United States
NHLBI NIH HHS · P01 HL081427 · United States
NHLBI NIH HHS · R01 HL063195 · United States
NHLBI NIH HHS · R33 HL087345 · United States
NHLBI NIH HHS · R33 HL087345-02 · United States
NHLBI NIH HHS · P01 HL077180 · United States
NHLBI NIH HHS · R33 HL087338-02 · United States
NHLBI NIH HHS · K99 HL095648 · United States
NHLBI NIH HHS · R01 HL082729 · United States
NHLBI NIH HHS · R33 HL087338 · United States
NHLBI NIH HHS · R37-HL54598 · United States
NHLBI NIH HHS · P01-HL077180 · United States
NHLBI NIH HHS · R33 HL087345-01A1 · United States
NHLBI NIH HHS · R33-HL87345 · United States
NHLBI NIH HHS · R00 HL095648 · United States
NHLBI NIH HHS · R01 HL067322 · United States
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