Home LiteratureArticle Details
PMID: 22005931 Published · ppublish English Journal Article Meta-Analysis Multicenter Study Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Genome-wide association analysis of age-at-onset in Alzheimer's disease.

Molecular psychiatry ·Vol. 17 ·No. 12 ·2012-12-00 ·Pages 1340-6

Kamboh MI, Barmada MM, Demirci FY, Minster RL, Carrasquillo MM, Pankratz VS, Younkin SG, Saykin AJ, Alzheimer's Disease Neuroimaging Initiative, Sweet RA, Feingold E, DeKosky ST, Lopez OL

Abstract

The risk of Alzheimer's disease (AD) is strongly determined by genetic factors and recent genome-wide association studies (GWAS) have identified several genes for the disease risk. In addition to the disease risk, age-at-onset (AAO) of AD has also strong genetic component with an estimated heritability of 42%. Identification of AAO genes may help to understand the biological mechanisms that regulate the onset of the disease. Here we report the first GWAS focused on identifying genes for the AAO of AD. We performed a genome-wide meta-analysis on three samples comprising a total of 2222 AD cases. A total of ~2.5 million directly genotyped or imputed single-nucleotide polymorphisms (SNPs) were analyzed in relation to AAO of AD. As expected, the most significant associations were observed in the apolipoprotein E (APOE) region on chromosome 19 where several SNPs surpassed the conservative genome-wide significant threshold (P<5E-08). The most significant SNP outside the APOE region was located in the DCHS2 gene on chromosome 4q31.3 (rs1466662; P=4.95E-07). There were 19 additional significant SNPs in this region at P<1E-04 and the DCHS2 gene is expressed in the cerebral cortex and thus is a potential candidate for affecting AAO in AD. These findings need to be confirmed in additional well-powered samples.

MeSH Terms
Age of Onset Aged Alzheimer Disease/epidemiology,genetics Apolipoproteins E/genetics Cadherins/genetics Female Genetic Predisposition to Disease/genetics Genome-Wide Association Study/methods,statistics & numerical data Humans Male Polymorphism, Single Nucleotide/genetics Whites/genetics
Chemicals
Apolipoproteins E Cadherins
Authors & Affiliations
13 authors, click to expand affiliations / ORCID
Kamboh M I
Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA. [email protected]
Barmada M M
Demirci F Y
Minster R L
Carrasquillo M M
Pankratz V S
Younkin S G
Saykin A J
Alzheimer's Disease Neuroimaging Initiative
Sweet R A
Feingold E
DeKosky S T
Lopez O L
References (32)
32 references, click to expand
  1. Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.
    Nat Genet. 2011 May;43(5):436-41 PMID: 21460841
  2. Genome-wide association analysis reveals putative Alzheimer's disease susceptibility loci in addition to APOE.
    Am J Hum Genet. 2008 Nov;83(5):623-32 PMID: 18976728
  3. The number of trait loci in late-onset Alzheimer disease.
    Am J Hum Genet. 2000 Jan;66(1):196-204 PMID: 10631151
  4. Alzheimer's Disease Neuroimaging Initiative (ADNI): clinical characterization.
    Neurology. 2010 Jan 19;74(3):201-9 PMID: 20042704
  5. Genomewide suggestive linkage of opioid dependence to chromosome 14q.
    Hum Mol Genet. 2007 Jun 1;16(11):1327-34 PMID: 17409192
  6. Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease.
    Nat Genet. 2009 Feb;41(2):192-8 PMID: 19136949
  7. VLDL receptor polymorphism, cognitive impairment, and dementia.
    Neurology. 2001 May 8;56(9):1183-8 PMID: 11342683
  8. Identification of new human cadherin genes using a combination of protein motif search and gene finding methods.
    J Mol Biol. 2004 Mar 19;337(2):307-17 PMID: 15003449
  9. PLINK: a tool set for whole-genome association and population-based linkage analyses.
    Am J Hum Genet. 2007 Sep;81(3):559-75 PMID: 17701901
  10. Role of genes and environments for explaining Alzheimer disease.
    Arch Gen Psychiatry. 2006 Feb;63(2):168-74 PMID: 16461860
  11. NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.
    PLoS Genet. 2009 Jun;5(6):e1000539 PMID: 19557197
  12. Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.
    Nat Genet. 2011 May;43(5):429-35 PMID: 21460840
  13. Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.
    Nat Genet. 2009 Oct;41(10):1088-93 PMID: 19734902
  14. Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.
    Mol Psychiatry. 2011 Jan;16(1):76-85 PMID: 19721433
  15. Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.
    Nat Genet. 2008 May;40(5):638-45 PMID: 18372903
  16. A neuronal VLDLR variant lacking the third complement-type repeat exhibits high capacity binding of apoE containing lipoproteins.
    Brain Res. 2009 Jun 18;1276:11-21 PMID: 19393635
  17. Replication study of genome-wide associated SNPs with late-onset Alzheimer's disease.
    Am J Med Genet B Neuropsychiatr Genet. 2011 Jun;156B(4):507-12 PMID: 21480501
  18. A comparison of statistical methods for meta-analysis.
    Stat Med. 2001 Mar 30;20(6):825-40 PMID: 11252006
  19. Risk estimates of dementia by apolipoprotein E genotypes from a population-based incidence study: the Rotterdam Study.
    Arch Neurol. 1998 Jul;55(7):964-8 PMID: 9678314
  20. Apolipoprotein E epsilon 4 allele and the lifetime risk of Alzheimer's disease. What physicians know, and what they should know.
    Arch Neurol. 1995 Nov;52(11):1074-9 PMID: 7487559
  21. Genome-wide analysis of genetic loci associated with Alzheimer disease.
    JAMA. 2010 May 12;303(18):1832-40 PMID: 20460622
  22. ADAMTS9, a novel member of the ADAM-TS/ metallospondin gene family.
    Genomics. 2000 Aug 1;67(3):343-50 PMID: 10936055
  23. Hrk/DP5 contributes to the apoptosis of select neuronal populations but is dispensable for haematopoietic cell apoptosis.
    J Cell Sci. 2007 Jun 15;120(Pt 12):2044-52 PMID: 17535852
  24. Clinical Core of the Alzheimer's Disease Neuroimaging Initiative: progress and plans.
    Alzheimers Dement. 2010 May;6(3):239-46 PMID: 20451872
  25. The relationship of APOE polymorphism and cholesterol levels in normoglycemic and diabetic subjects in a biethnic population from the San Luis Valley, Colorado.
    Atherosclerosis. 1995 Jan 20;112(2):145-59 PMID: 7772075
  26. Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease.
    Nat Genet. 2009 Oct;41(10):1094-9 PMID: 19734903
  27. Alzheimer's Disease Neuroimaging Initiative biomarkers as quantitative phenotypes: Genetics core aims, progress, and plans.
    Alzheimers Dement. 2010 May;6(3):265-73 PMID: 20451875
  28. Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.
    Neuroimage. 2010 Nov 15;53(3):1051-63 PMID: 20100581
  29. Age at onset in two common neurodegenerative diseases is genetically controlled.
    Am J Hum Genet. 2002 Apr;70(4):985-93 PMID: 11875758
  30. Alpha-1-antichymotrypsin (ACT or SERPINA3) polymorphism may affect age-at-onset and disease duration of Alzheimer's disease.
    Neurobiol Aging. 2006 Oct;27(10):1435-9 PMID: 16137793
  31. The CALHM1 P86L polymorphism is a genetic modifier of age at onset in Alzheimer's disease: a meta-analysis study.
    J Alzheimers Dis. 2010;22(1):247-55 PMID: 20847397
  32. Measuring inconsistency in meta-analyses.
    BMJ. 2003 Sep 6;327(7414):557-60 PMID: 12958120
Article Info
Journal
Molecular psychiatry
Abbr.
Mol Psychiatry
ISSN
1476-5578
Published
2012-12-00
Epub
2011-00-18
Pages
1340-6
Language
English
Region
England
NLM ID
9607835
PMCID
PMC3262952
Subset
IM
Grants
NIA NIH HHS · K01 AG030514 · United States
NIA NIH HHS · R01 AG019771 · United States
NIA NIH HHS · P30 AG10133 · United States
NIA NIH HHS · P50 AG005133-28 · United States
NIA NIH HHS · R01 AG018023-05 · United States
NIA NIH HHS · AG030653 · United States
NIA NIH HHS · R01 AG030653-03 · United States
NIA NIH HHS · P50 AG005133 · United States
NIA NIH HHS · R01 AG19771 · United States
NIA NIH HHS · P30 AG010129 · United States
NIA NIH HHS · AG005133 · United States
NIA NIH HHS · R01 AG018023 · United States
NIA NIH HHS · AG027224 · United States
NIA NIH HHS · P30 AG010133 · United States
NIA NIH HHS · U24 AG021886 · United States
NIA NIH HHS · U01 AG024904 · United States
NIA NIH HHS · R01 AG027224-05 · United States
NIA NIH HHS · RC2 AG036535 · United States
NIA NIH HHS · AG18023 · United States
NIA NIH HHS · R01 AG030653 · United States
NIA NIH HHS · R01 AG027224 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]