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PMID: 22675578 Published · ppublish English Journal Article

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

Standards in genomic sciences ·Vol. 5 ·No. 3 ·2011-12-31 ·Pages 269-78

Grote J, Bayindirli C, Bergauer K, Carpintero de Moraes P, Chen H, D'Ambrosio L, Edwards B, Fernández-Gómez B, Hamisi M, Logares R, Nguyen D, Rii YM, Saeck E, Schutte C, Widner B, Church MJ, Steward GF, Karl DM, Delong EF, Eppley JM, Schuster SC, Kyrpides NC, Rappé MS

Abstract

Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

Keywords

Rhodospirillaceae SAR116 genome marine bacterioplankton proteorhodopsin

Authors & Affiliations

23 authors, click to expand affiliations / ORCID

Grote Jana

Bayindirli Cansu

Bergauer Kristin

Carpintero de Moraes Paula

Chen Huan

D'Ambrosio Lindsay

Edwards Bethanie

Fernández-Gómez Beatriz

Hamisi Mariam

Logares Ramiro

Nguyen Dan

Rii Yoshimi M

Saeck Emily

Schutte Charles

Widner Brittany

Church Matthew J

Steward Grieg F

Karl David M

Delong Edward F

Eppley John M

Schuster Stephan C

Kyrpides Nikos C

Rappé Michael S

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Article Info

Journal

Standards in genomic sciences

Abbr.

Stand Genomic Sci

ISSN

1944-3277

DOI

10.4056/sigs.1854551

Published

2011-12-31

Epub

2011-00-23

Pages

269-78

Language

English

Region

England

NLM ID

101530505

PMCID

PMC3368413

External Links

PubMed source DOI: 10.4056/sigs.1854551 PMC Full Text View journal details

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Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

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