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PMID: 23887774 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

ACMG clinical laboratory standards for next-generation sequencing.

Rehm HL, Bale SJ, Bayrak-Toydemir P, Berg JS, Brown KK, Deignan JL, Friez MJ, Funke BH, Hegde MR, Lyon E, Working Group of the American College of Medical Genetics and Genomics Laboratory Quality Assurance Commitee

Abstract

Next-generation sequencing technologies have been and continue to be deployed in clinical laboratories, enabling rapid transformations in genomic medicine. These technologies have reduced the cost of large-scale sequencing by several orders of magnitude, and continuous advances are being made. It is now feasible to analyze an individual's near-complete exome or genome to assist in the diagnosis of a wide array of clinical scenarios. Next-generation sequencing technologies are also facilitating further advances in therapeutic decision making and disease prediction for at-risk patients. However, with rapid advances come additional challenges involving the clinical validation and use of these constantly evolving technologies and platforms in clinical laboratories. To assist clinical laboratories with the validation of next-generation sequencing methods and platforms, the ongoing monitoring of next-generation sequencing testing to ensure quality results, and the interpretation and reporting of variants found using these technologies, the American College of Medical Genetics and Genomics has developed the following professional standards and guidelines.

MeSH Terms
Exome Genetic Testing/standards Genome, Human Genomics/methods High-Throughput Nucleotide Sequencing/standards Humans Laboratories/standards Reproducibility of Results Sequence Analysis, DNA/instrumentation,methods,standards Translational Research, Biomedical United States
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Rehm Heidi L
Laboratory for Molecular Medicine, Partners Healthcare Center for Personalized Genetic Medicine, Boston, Massachusetts, USA. [email protected]
Bale Sherri J
Bayrak-Toydemir Pinar
Berg Jonathan S
Brown Kerry K
Deignan Joshua L
Friez Michael J
Funke Birgit H
Hegde Madhuri R
Lyon Elaine
Working Group of the American College of Medical Genetics and Genomics Laboratory Quality Assurance Commitee
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Article Info
Journal
Genetics in medicine : official journal of the American College of Medical Genetics
Abbr.
Genet Med
ISSN
1530-0366
Published
2013-09-00
Epub
2013-00-25
Pages
733-47
Language
English
Region
United States
NLM ID
9815831
PMCID
PMC4098820
Subset
IM
Grants
NHGRI NIH HHS · U01 HG006487 · United States
NHGRI NIH HHS · U01 HG006500 · United States
NHGRI NIH HHS · U41 HG009650 · United States
NHGRI NIH HHS · HG006500 · United States
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