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PMID: 23893156 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Unraveling the sperm proteome and post-genomic pathways associated with sperm nuclear DNA fragmentation.

Journal of assisted reproduction and genetics ·Vol. 30 ·No. 9 ·2013-09-00 ·Pages 1187-202

Intasqui P, Camargo M, Del Giudice PT, Spaine DM, Carvalho VM, Cardozo KH, Cedenho AP, Bertolla RP

Abstract

Sperm DNA fragmentation has been suggested as a marker for infertility diagnosis and prognosis. Hence, understanding its impact on male physiology and post-genomic pathways would be clinically important. We performed the proteomics and functional enrichment analyses of viable spermatozoa from ejaculates with low and high sperm DNA fragmentation to identify protein expression and pathways altered in association with sperm DNA fragmentation. Sperm DNA fragmentation using the Comet assay and the Komet 6.0.1 software was assessed in raw samples from 89 subjects from a human reproduction service. The Low and High sperm DNA fragmentation groups were formed according to the Olive Tail Moment variable. Spermatozoa proteins from these groups were pooled and analyzed by a shotgun proteomic approach (2D nanoUPLC-ESI-MS(E)). Differentially expressed proteins were used for a functional enrichment study. Two hundred and fifty-seven proteins were identified or quantified in sperm from the Low and High sperm DNA fragmentation groups. Of these, seventy-one proteins were exclusively or overexpressed in the Low group, whereas twenty-three proteins were exclusively or overexpressed in the High group. One hundred and sixty-three proteins were conserved between these groups. We also functionally related the differentially expressed proteins in viable spermatozoa from the groups. Processes such as triacylglycerol metabolism, energy production, protein folding, response to unfolded proteins, and cellular detoxification were found to be altered in these cells. Sperm DNA fragmentation is associated with differential protein expression in viable spermatozoa. These proteins may potentially be used as biomarkers for sperm DNA integrity.

MeSH Terms
Cell Nucleus Comet Assay DNA/chemistry,genetics DNA Fragmentation Humans Male Metabolic Networks and Pathways/genetics Protein Biosynthesis Proteome Spermatozoa/chemistry,metabolism
Chemicals
Proteome DNA
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Intasqui Paula
Department of Surgery, Division of Urology, Human Reproduction Section, Sao Paulo Federal University - Sao Paulo Hospital, R. Embau, 231, 04039-060, Sao Paulo, Brazil, [email protected].
Camargo Mariana
Del Giudice Paula T
Spaine Deborah M
Carvalho Valdemir M
Cardozo Karina H M
Cedenho Agnaldo P
Bertolla Ricardo P
References (107)
107 references, click to expand
  1. Participation of the human sperm proteasome in the capacitation process and its regulation by protein kinase A and tyrosine kinase.
    Biol Reprod. 2009 May;80(5):1026-35 PMID: 19144957
  2. Protein alterations associated with pancreatic cancer and chronic pancreatitis found in human plasma using global quantitative proteomics profiling.
    J Proteome Res. 2011 May 6;10(5):2359-76 PMID: 21443201
  3. The role of proteomics in understanding sperm cell biology.
    Int J Androl. 2008 Jun;31(3):295-302 PMID: 18179557
  4. A time-dependent phase shift in the mammalian unfolded protein response.
    Dev Cell. 2003 Feb;4(2):265-71 PMID: 12586069
  5. Role of reactive oxygen species in the pathophysiology of human reproduction.
    Fertil Steril. 2003 Apr;79(4):829-43 PMID: 12749418
  6. Alterations in mitochondria membrane potential and oxidative stress in infertile men: a prospective observational study.
    Fertil Steril. 2003 Sep;80 Suppl 2:844-50 PMID: 14505763
  7. Sperm chromatin damage impairs human fertility. The Danish First Pregnancy Planner Study Team.
    Fertil Steril. 2000 Jan;73(1):43-50 PMID: 10632410
  8. Sperm DNA fragmentation: paternal effect on early post-implantation embryo development in ART.
    Hum Reprod. 2006 Nov;21(11):2876-81 PMID: 16793992
  9. The concentration of pepsinogen C in human semen and the physiological activation of zymogen in the vagina.
    Biol Reprod. 1989 Mar;40(3):653-9 PMID: 2758094
  10. Ram rete testis fluid contains a protein (clusterin) which influences cell-cell interactions in vitro.
    Biol Reprod. 1983 Jun;28(5):1173-88 PMID: 6871313
  11. Cytoscape 2.8: new features for data integration and network visualization.
    Bioinformatics. 2011 Feb 1;27(3):431-2 PMID: 21149340
  12. Novel technologies for selecting the best sperm for in vitro fertilization and intracytoplasmic sperm injection.
    Fertil Steril. 2013 Mar 15;99(4):1023-9 PMID: 23357456
  13. Ca2+ signaling tools acquired from prostasomes are required for progesterone-induced sperm motility.
    Sci Signal. 2011 May 17;4(173):ra31 PMID: 21586728
  14. SP-40,40, a newly identified normal human serum protein found in the SC5b-9 complex of complement and in the immune deposits in glomerulonephritis.
    J Clin Invest. 1988 Jun;81(6):1858-64 PMID: 2454950
  15. Poor development of outer dense fibers as a major cause of tail abnormalities in the spermatozoa of asthenoteratozoospermic men.
    Hum Reprod. 1991 Nov;6(10):1431-8 PMID: 1770140
  16. Gluconeogenesis-linked glycogen metabolism is important in the achievement of in vitro capacitation of dog spermatozoa in a medium without glucose.
    Biol Reprod. 2004 Nov;71(5):1437-45 PMID: 15215203
  17. Male factor infertility: evaluation and management.
    Med Clin North Am. 2004 Mar;88(2):367-85 PMID: 15049583
  18. Oxidative DNA damage in human sperm influences time to pregnancy.
    Hum Reprod. 2003 Jun;18(6):1265-72 PMID: 12773457
  19. Are tests of sperm DNA damage clinically useful? Pros and cons.
    J Androl. 2009 May-Jun;30(3):219-29 PMID: 19059901
  20. Evaluation of mitochondrial respiratory efficiency during in vitro capacitation of human spermatozoa.
    Int J Androl. 2011 Jun;34(3):247-55 PMID: 20546047
  21. Role of reactive oxygen species in male infertility.
    Urology. 1996 Dec;48(6):835-50 PMID: 8973665
  22. Proteomic analysis of seminal plasma from normal volunteers and post-vasectomy patients identifies over 2000 proteins and candidate biomarkers of the urogenital system.
    J Proteome Res. 2011 Mar 4;10(3):941-53 PMID: 21142078
  23. Localization of sulfated glycoprotein-2 (clusterin) on spermatozoa and in the reproductive tract of the male rat.
    Biol Reprod. 1991 Jul;45(1):195-207 PMID: 1878433
  24. Amniotic fluid proteome analysis from Down syndrome pregnancies for biomarker discovery.
    J Proteome Res. 2010 Jul 2;9(7):3574-82 PMID: 20459121
  25. Human prostasomes express glycolytic enzymes with capacity for ATP production.
    Am J Physiol Endocrinol Metab. 2013 Mar 15;304(6):E576-82 PMID: 23341497
  26. Extent of nuclear DNA damage in ejaculated spermatozoa impacts on blastocyst development after in vitro fertilization.
    Fertil Steril. 2004 Aug;82(2):378-83 PMID: 15302287
  27. Association between seasonal changes in fatty-acid composition, expression of VLDL receptor and bovine sperm quality.
    Theriogenology. 2007 Mar 1;67(4):878-85 PMID: 17157373
  28. Glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme, is required for sperm motility and male fertility.
    Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16501-6 PMID: 15546993
  29. Tisp40, a spermatid specific bZip transcription factor, functions by binding to the unfolded protein response element via the Rip pathway.
    Genes Cells. 2005 Jun;10(6):575-94 PMID: 15938716
  30. Antioxidant capacity of prostasomes in human semen.
    Mol Hum Reprod. 1998 Jul;4(7):667-72 PMID: 9701789
  31. New insights into the molecular mechanisms of sperm-egg interaction.
    Cell Mol Life Sci. 2007 Jul;64(14):1805-23 PMID: 17447007
  32. Targeted disruption of the Akap4 gene causes defects in sperm flagellum and motility.
    Dev Biol. 2002 Aug 15;248(2):331-42 PMID: 12167408
  33. BisoGenet: a new tool for gene network building, visualization and analysis.
    BMC Bioinformatics. 2010 Feb 17;11:91 PMID: 20163717
  34. Glycolysis plays a major role for adenosine triphosphate supplementation in mouse sperm flagellar movement.
    Biol Reprod. 2004 Aug;71(2):540-7 PMID: 15084484
  35. Incidence of Fas positivity and deoxyribonucleic acid double-stranded breaks in human ejaculated sperm.
    Fertil Steril. 2004 Mar;81 Suppl 1:767-74 PMID: 15019807
  36. The role of glucose in supporting motility and capacitation in human spermatozoa.
    J Androl. 2001 Jul-Aug;22(4):680-95 PMID: 11451366
  37. Extracting biology from high-dimensional biological data.
    J Exp Biol. 2007 May;210(Pt 9):1507-17 PMID: 17449816
  38. Detection of apoptotic alterations in sperm in subfertile patients and their correlations with sperm quality.
    Hum Reprod. 2002 May;17(5):1266-73 PMID: 11980750
  39. Metabolic strategy of boar spermatozoa revealed by a metabolomic characterization.
    FEBS Lett. 2003 Nov 20;554(3):342-6 PMID: 14623091
  40. Production of interleukin-1-like molecules by human sperm cells.
    Fertil Steril. 2000 Jun;73(6):1132-7 PMID: 10856470
  41. Role of proteasomal activity in the induction of acrosomal exocytosis in human spermatozoa.
    Reprod Biomed Online. 2008 Mar;16(3):391-400 PMID: 18339263
  42. The molecular chaperone HSPA2 plays a key role in regulating the expression of sperm surface receptors that mediate sperm-egg recognition.
    PLoS One. 2012;7(11):e50851 PMID: 23209833
  43. Sperm morphologic features as a prognostic factor in in vitro fertilization.
    Fertil Steril. 1986 Dec;46(6):1118-23 PMID: 2946611
  44. The sperm outer dense fiber protein is the 10th member of the superfamily of mammalian small stress proteins.
    Cell Stress Chaperones. 2003 Spring;8(1):62-9 PMID: 12820655
  45. Importance of glycolysable substrates for in vitro capacitation of human spermatozoa.
    Biol Reprod. 1990 Dec;43(6):1064-9 PMID: 2291925
  46. Late, but not early, paternal effect on human embryo development is related to sperm DNA fragmentation.
    Hum Reprod. 2004 Mar;19(3):611-5 PMID: 14998960
  47. Small stress proteins: modulation of intracellular redox state and protection against oxidative stress.
    Prog Mol Subcell Biol. 2002;28:171-84 PMID: 11908058
  48. Negative effects of increased sperm DNA damage in relation to seminal oxidative stress in men with idiopathic and male factor infertility.
    Fertil Steril. 2003 Jun;79 Suppl 3:1597-605 PMID: 12801566
  49. Clusterin (complement lysis inhibitor) forms a high density lipoprotein complex with apolipoprotein A-I in human plasma.
    J Biol Chem. 1991 Jun 15;266(17):11030-6 PMID: 1904058
  50. Evaluation of nuclear DNA damage in human spermatozoa in men opting for assisted reproduction.
    Indian J Med Res. 2008 Feb;127(2):115-23 PMID: 18403788
  51. Comet assay analysis of single-stranded DNA breaks in circulating leukocytes of glaucoma patients.
    Mol Vis. 2008 Aug 29;14:1584-8 PMID: 18769648
  52. Abnormal sperm parameters in humans are indicative of an abortive apoptotic mechanism linked to the Fas-mediated pathway.
    Exp Cell Res. 1999 Sep 15;251(2):350-5 PMID: 10471320
  53. Cholesterol concentration in seminal plasma as a predictive tool for quality semen evaluation.
    Theriogenology. 2009 Nov;72(8):1132-40 PMID: 19767087
  54. Human sperm tail proteome suggests new endogenous metabolic pathways.
    Mol Cell Proteomics. 2013 Feb;12(2):330-42 PMID: 23161514
  55. Correlation of sperm motility with mitochondrial enzymatic activities.
    Clin Chem. 1998 Aug;44(8 Pt 1):1616-20 PMID: 9702947
  56. Role of glutathione peroxidase in protecting mammalian spermatozoa from loss of motility caused by spontaneous lipid peroxidation.
    Gamete Res. 1989 May;23(1):77-90 PMID: 2545584
  57. Role of heat shock protein HSP70-2 in spermatogenesis.
    Rev Reprod. 1999 Jan;4(1):23-30 PMID: 10051099
  58. Ubiquitin-activating enzyme (UBA1) is required for sperm capacitation, acrosomal exocytosis and sperm-egg coat penetration during porcine fertilization.
    Int J Androl. 2012 Apr;35(2):196-210 PMID: 21950462
  59. VDAC2 inhibits BAK activation and mitochondrial apoptosis.
    Science. 2003 Jul 25;301(5632):513-7 PMID: 12881569
  60. Analysis and difference of voltage-dependent anion channel mRNA in ejaculated spermatozoa from normozoospermic fertile donors and infertile patients with idiopathic asthenozoospermia.
    J Assist Reprod Genet. 2010 Dec;27(12):719-24 PMID: 20809416
  61. Absence of glucose decreases human fertilization and sperm movement characteristics in vitro.
    Hum Reprod. 1997 Jan;12(1):119-23 PMID: 9043915
  62. Effect of leukocytospermia and processing by discontinuous density gradient on sperm nuclear DNA fragmentation and mitochondrial activity.
    J Assist Reprod Genet. 2009 Mar;26(2-3):151-7 PMID: 19184399
  63. Prostasome fraction of human seminal plasma prevents sperm from becoming acrosomally responsive to the agonist progesterone.
    Arch Androl. 1997 Jul-Aug;39(1):39-44 PMID: 9202832
  64. Cytoplasmic extrusion and the switch from creatine kinase B to M isoform are completed by the commencement of epididymal transport in human and stallion spermatozoa.
    J Androl. 1998 Jan-Feb;19(1):11-20 PMID: 9537287
  65. Sperm DNA integrity and male infertility.
    Urology. 2005 Jan;65(1):16-22 PMID: 15667855
  66. Types, causes, detection and repair of DNA fragmentation in animal and human sperm cells.
    Int J Mol Sci. 2012 Oct 31;13(11):14026-52 PMID: 23203048
  67. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
    Nucleic Acids Res. 2009 Jan;37(1):1-13 PMID: 19033363
  68. Sperm nuclear DNA fragmentation rate is associated with differential protein expression and enriched functions in human seminal plasma.
    BJU Int. 2013 Oct;112(6):835-43 PMID: 23890255
  69. A putative, ubiquitin-dependent mechanism for the recognition and elimination of defective spermatozoa in the mammalian epididymis.
    J Cell Sci. 2001 May;114(Pt 9):1665-75 PMID: 11309198
  70. Reactive oxygen species influence the acrosome reaction but not acrosin activity in human spermatozoa.
    Int J Androl. 1999 Feb;22(1):37-42 PMID: 10068942
  71. Testis-specific cytochrome c-null mice produce functional sperm but undergo early testicular atrophy.
    Mol Cell Biol. 2002 Aug;22(15):5554-62 PMID: 12101247
  72. Sperm DNA integrity assessment in prediction of assisted reproduction technology outcome.
    Hum Reprod. 2007 Jan;22(1):174-9 PMID: 16921163
  73. RNF8-dependent histone ubiquitination during DNA damage response and spermatogenesis.
    Acta Biochim Biophys Sin (Shanghai). 2011 May;43(5):339-45 PMID: 21444325
  74. CD4-mediated anchoring of the seminal antigen gp17 onto the spermatozoon surface.
    Hum Immunol. 1997 Nov;58(1):30-41 PMID: 9438207
  75. Expression of the HSPA2 gene in ejaculated spermatozoa from adolescents with and without varicocele.
    Fertil Steril. 2006 Dec;86(6):1659-63 PMID: 17007855
  76. Measurement of protein using bicinchoninic acid.
    Anal Biochem. 1985 Oct;150(1):76-85 PMID: 3843705
  77. Seminal plasma biochemical markers and their association with semen analysis findings.
    Urology. 1999 Mar;53(3):596-603 PMID: 10096390
  78. Biomarkers of in vivo fertility in sperm and seminal plasma of fertile stallions.
    Theriogenology. 2010 Oct 1;74(6):956-67 PMID: 20580075
  79. Oxygen uptake by mitochondria in demembranated human spermatozoa: a reliable tool for the evaluation of sperm respiratory efficiency.
    Int J Androl. 2008 Jun;31(3):337-45 PMID: 17573845
  80. Fragmentation of DNA in morphologically normal human spermatozoa.
    Fertil Steril. 2009 Apr;91(4):1077-84 PMID: 18440529
  81. Dense fibers protect mammalian sperm against damage.
    Biol Reprod. 1990 Sep;43(3):485-91 PMID: 2271730
  82. Evaluation of sperm proteins in infertile men: a proteomic approach.
    Fertil Steril. 2011 Jun 30;95(8):2745-8 PMID: 21536282
  83. Prostasomes: inhibitors of capacitation and modulators of cellular signalling in human sperm.
    Int J Androl. 2011 Dec;34(6 Pt 1):568-80 PMID: 21029115
  84. The use of anticlusterin monoclonal antibodies for the combined assessment of human sperm morphology and acrosome integrity.
    Hum Reprod. 1994 Aug;9(8):1490-6 PMID: 7989511
  85. Correlation between clusterin-positive spermatozoa determined by flow cytometry in bull semen and fertility.
    J Androl. 2000 Nov-Dec;21(6):887-94 PMID: 11105915
  86. Sperm DNA fragmentation decreases the pregnancy rate in an assisted reproductive technique.
    Hum Reprod. 2003 May;18(5):1023-8 PMID: 12721180
  87. The use of genomics, proteomics, and metabolomics in identifying biomarkers of male infertility.
    Fertil Steril. 2013 Mar 15;99(4):998-1007 PMID: 23415969
  88. Induction of the TRPM-2 gene in cells undergoing programmed death.
    Mol Cell Biol. 1989 Aug;9(8):3473-81 PMID: 2477686
  89. Ascorbic Acid in human seminal plasma: determination and its relationship to sperm quality.
    J Clin Biochem Nutr. 2009 Sep;45(2):144-9 PMID: 19794921
  90. Can mitochondrial DNA mutations cause sperm dysfunction?
    Mol Hum Reprod. 2002 Aug;8(8):719-21 PMID: 12149402
  91. Human outer dense fiber gene, ODF2, localizes to chromosome 9q34.
    Cytogenet Cell Genet. 1998;83(3-4):221-3 PMID: 10072582
  92. Sperm proteome mapping of a patient who experienced failed fertilization at IVF reveals altered expression of at least 20 proteins compared with fertile donors: case report.
    Hum Reprod. 2004 Jun;19(6):1438-47 PMID: 15105389
  93. Mitochondria-related male infertility.
    Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15148-53 PMID: 17005726
  94. Loss of zona pellucida binding proteins in the acrosomal matrix disrupts acrosome biogenesis and sperm morphogenesis.
    Mol Cell Biol. 2007 Oct;27(19):6794-805 PMID: 17664285
  95. Nature of DNA damage in ejaculated human spermatozoa and the possible involvement of apoptosis.
    Biol Reprod. 2002 Apr;66(4):1061-7 PMID: 11906926
  96. Sequence of sperm cell surface differentiation and its relationship to exogenous fluid proteins in the ram epididymis.
    Biol Reprod. 1983 Nov;29(4):1033-46 PMID: 6640035
  97. Detection of cytokines (interleukin-1, interleukin-6, transforming growth factor-beta) and soluble tumour necrosis factor receptors in embryo culture fluids during in-vitro fertilization.
    Hum Reprod. 1995 Jan;10(1):171-6 PMID: 7745050
  98. Chaperone function of sHsps.
    Prog Mol Subcell Biol. 2002;28:37-59 PMID: 11908065
  99. Analysis of DNA fragmentation, plasma membrane translocation of phosphatidylserine and oxidative stress in human spermatozoa.
    Hum Reprod. 2000 Jun;15(6):1338-44 PMID: 10831565
  100. Diagnostic evaluation of the infertile male: a committee opinion.
    Fertil Steril. 2012 Aug;98(2):294-301 PMID: 22698639
  101. Embryo quality and IVF treatment outcomes may correlate with different sperm comet assay parameters.
    Hum Reprod. 2002 Jul;17(7):1856-62 PMID: 12093852
  102. Reactive oxygen species as an independent marker of male factor infertility.
    Fertil Steril. 2006 Oct;86(4):878-85 PMID: 17027357
  103. Small stress proteins: novel negative modulators of apoptosis induced independently of reactive oxygen species.
    Prog Mol Subcell Biol. 2002;28:185-204 PMID: 11908059
  104. Unbiased label-free quantitative proteomic profiling and enriched proteomic pathways in seminal plasma of adult men before and after varicocelectomy.
    Hum Reprod. 2013 Jan;28(1):33-46 PMID: 23042794
  105. Relation of mammalian sperm chromatin heterogeneity to fertility.
    Science. 1980 Dec 5;210(4474):1131-3 PMID: 7444440
  106. Oxidative stress and male infertility--a clinical perspective.
    Hum Reprod Update. 2008 May-Jun;14(3):243-58 PMID: 18281241
  107. Voltage-dependent anion-selective channels VDAC2 and VDAC3 are abundant proteins in bovine outer dense fibers, a cytoskeletal component of the sperm flagellum.
    J Biol Chem. 2004 Apr 9;279(15):15281-8 PMID: 14739283
Article Info
Journal
Journal of assisted reproduction and genetics
Abbr.
J Assist Reprod Genet
ISSN
1573-7330
Published
2013-09-00
Epub
2013-00-27
Pages
1187-202
Language
English
Region
Netherlands
NLM ID
9206495
PMCID
PMC3800528
Subset
IM
Analysis Services
Analysis Services

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