Home LiteratureArticle Details
PMID: 24747641 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

De novo mutations in HCN1 cause early infantile epileptic encephalopathy.

Nature genetics ·Vol. 46 ·No. 6 ·2014-06-00 ·Pages 640-5

Nava C, Dalle C, Rastetter A, Striano P, de Kovel CG, Nabbout R, Cancès C, Ville D, Brilstra EH, Gobbi G, Raffo E, Bouteiller D, Marie Y, Trouillard O, Robbiano A, Keren B, Agher D, Roze E, Lesage S, Nicolas A, Brice A, Baulac M, Vogt C, El Hajj N, Schneider E, Suls A, Weckhuysen S, Gormley P, Lehesjoki AE, De Jonghe P, Helbig I, Baulac S, Zara F, Koeleman BP, EuroEPINOMICS RES Consortium, Haaf T, LeGuern E, Depienne C

Abstract

Hyperpolarization-activated, cyclic nucleotide-gated (HCN) channels contribute to cationic Ih current in neurons and regulate the excitability of neuronal networks. Studies in rat models have shown that the Hcn1 gene has a key role in epilepsy, but clinical evidence implicating HCN1 mutations in human epilepsy is lacking. We carried out exome sequencing for parent-offspring trios with fever-sensitive, intractable epileptic encephalopathy, leading to the discovery of two de novo missense HCN1 mutations. Screening of follow-up cohorts comprising 157 cases in total identified 4 additional amino acid substitutions. Patch-clamp recordings of Ih currents in cells expressing wild-type or mutant human HCN1 channels showed that the mutations had striking but divergent effects on homomeric channels. Individuals with mutations had clinical features resembling those of Dravet syndrome with progression toward atypical absences, intellectual disability and autistic traits. These findings provide clear evidence that de novo HCN1 point mutations cause a recognizable early-onset epileptic encephalopathy in humans.

MeSH Terms
Aicardi Syndrome/genetics Amino Acid Sequence Animals CHO Cells Child, Preschool Cohort Studies Cricetinae Cricetulus DNA Mutational Analysis Female Humans Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels/genetics Infant Male Molecular Sequence Data Mutation, Missense Patch-Clamp Techniques Pedigree Point Mutation Potassium Channels/genetics Sequence Analysis, DNA Sequence Homology, Amino Acid Spasms, Infantile/genetics
Chemicals
HCN1 protein, human Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels Potassium Channels
Authors & Affiliations
38 authors, click to expand affiliations / ORCID
Nava Caroline
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France. [4] Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique, Unité Fonctionnelle de Neurogénétique Moléculaire et Cellulaire, Paris, France. [5].
Dalle Carine
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] Institut du Cerveau et de la Moelle Epinière, Plateforme d'Electrophysiologie, Paris, France. [3].
Rastetter Agnès
INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France.
Striano Pasquale
Pediatric Neurology and Muscular Diseases Unit, Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, 'G Gaslini Institute', Genova, Italy.
de Kovel Carolien G F ORCID
Department of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Nabbout Rima
1] Department of Pediatric Neurology, Centre de Référence Epilepsies Rares, Hôpital Necker-Enfants Malades, AP-HP, Paris, France. [2] INSERM U663, Université Paris Descartes, Sorbonne Paris Cité, Hôpital Necker-Enfants Malades, Paris, France.
Cancès Claude
Service de Neurologie Pédiatrique, Hôpital des Enfants, Centre Hospitalier Universitaire de Toulouse, Toulouse, France.
Ville Dorothée
Service de Neurologie Pédiatrique, Hôpital Femme Mère Enfant, Centre Hospitalier Universitaire de Lyon, Bron, France.
Brilstra Eva H
Department of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Gobbi Giuseppe
Child Neurology Unit, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS) Institute of Neurological Sciences of Bologna, Bologna, Italy.
Raffo Emmanuel
Service de Neuropédiatrie, Hôpital d'Enfants de Brabois, Centre Hospitalier Universitaire de Nancy, Vandoeuvre Les Nancy, France.
Bouteiller Delphine
Institut du Cerveau et de la Moelle Epinière, Plateforme de Génotypage et Séquençage, Paris, France.
Marie Yannick
Institut du Cerveau et de la Moelle Epinière, Plateforme de Génotypage et Séquençage, Paris, France.
Trouillard Oriane
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France. [3] Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique, Unité Fonctionnelle de Neurogénétique Moléculaire et Cellulaire, Paris, France.
Robbiano Angela
Laboratory of Neurogenetics, Department of Neurosciences, Gaslini Institute, Genova, Italy.
Keren Boris
AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique, Unité Fonctionnelle de Cytogénétique, Paris, France.
Agher Dahbia
INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France.
Roze Emmanuel
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France.
Lesage Suzanne
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France.
Nicolas Aude
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France.
Brice Alexis
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France. [4] Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique, Unité Fonctionnelle de Neurogénétique Moléculaire et Cellulaire, Paris, France.
Baulac Michel
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France.
Vogt Cornelia
Institüt für Humangenetik, Universität Würzburg, Würzburg, Germany.
El Hajj Nady
Institüt für Humangenetik, Universität Würzburg, Würzburg, Germany.
Schneider Eberhard
Institüt für Humangenetik, Universität Würzburg, Würzburg, Germany.
Suls Arvid
1] Neurogenetics Group, Department of Molecular Genetics, VIB, Antwerp, Belgium. [2] Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Weckhuysen Sarah
1] Neurogenetics Group, Department of Molecular Genetics, VIB, Antwerp, Belgium. [2] Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Gormley Padhraig
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Lehesjoki Anna-Elina
1] Folkhälsan Institute of Genetics, Helsinki, Finland. [2] Research Programs Unit, Molecular Neurology and Neuroscience Center, University of Helsinki, Helsinki, Finland.
De Jonghe Peter
1] Neurogenetics Group, Department of Molecular Genetics, VIB, Antwerp, Belgium. [2] Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Helbig Ingo
Department of Neuropediatrics, University Medical Center Schleswig-Holstein, Christian Albrechts University, Kiel, Germany.
Baulac Stéphanie ORCID
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France.
Zara Federico
Laboratory of Neurogenetics, Department of Neurosciences, Gaslini Institute, Genova, Italy.
Koeleman Bobby P C
Department of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
EuroEPINOMICS RES Consortium
Haaf Thomas
Institüt für Humangenetik, Universität Würzburg, Würzburg, Germany.
LeGuern Eric
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] CNRS 7225, Hôpital Pitié-Salpêtrière, Paris, France. [3] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France. [4] Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique, Unité Fonctionnelle de Neurogénétique Moléculaire et Cellulaire, Paris, France.
Depienne Christel
1] INSERM UMR 975, Institut du Cerveau et de la Moelle Epinière, Hôpital Pitié-Salpêtrière, Paris, France. [2] Université Pierre et Marie Curie-Paris 6 (UPMC), UMRS 975, Paris, France. [3] Institüt für Humangenetik, Universität Würzburg, Würzburg, Germany.
Supplementary Concepts
Infantile Epileptic-Dyskinetic Encephalopathy (Disease)
Investigators
40 investigators, click to expand
Balling Rudi
Barisic Nina
Baulac Stéphanie
Caglayan Hande S
Craiu Dana C
De Jonghe Peter
Depienne Christel
Gormley Padhraig
Guerrini Renzo
Helbig Ingo
Hjalgrim Helle
Hoffman-Zacharska Dorota
Jähn Johanna
Klein Karl Martin
Koeleman Bobby P C
Komarek Vladimir
Krause Roland
LeGuern Eric
Lehesjoki Anna-Elina
Lemke Johannes R
Lerche Holger
Marini Carla
May Patrick
Møller Rikke S
Muhle Hiltrud
Palotie Aarno
Pal Deb
Rosenow Felix
Selmer Kaja
Serratosa José M
Sisodiya Sanjay
Stephani Ulrich
Sterbova Katalin
Striano Pasquale
Suls Arvid
Talvik Tiina
von Spiczak Sarah
Weber Yvonne
Weckhuysen Sarah
Zara Federico
References (45)
45 references, click to expand
  1. Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS.
    J Neurosci. 2000 Jul 15;20(14):5264-75 PMID: 10884310
  2. Progressive dendritic HCN channelopathy during epileptogenesis in the rat pilocarpine model of epilepsy.
    J Neurosci. 2007 Nov 21;27(47):13012-21 PMID: 18032674
  3. Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
    Eur J Hum Genet. 2014 Jan;22(1):71-8 PMID: 23632794
  4. X-linked protocadherin 19 mutations cause female-limited epilepsy and cognitive impairment.
    Nat Genet. 2008 Jun;40(6):776-81 PMID: 18469813
  5. HCN channels: function and clinical implications.
    Neurology. 2013 Jan 15;80(3):304-10 PMID: 23319474
  6. Hyperpolarization-activated cation channels: from genes to function.
    Physiol Rev. 2009 Jul;89(3):847-85 PMID: 19584315
  7. Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing.
    Nat Biotechnol. 2011 Dec 18;30(1):61-8 PMID: 22178994
  8. Loss of dendritic HCN1 subunits enhances cortical excitability and epileptogenesis.
    J Neurosci. 2009 Sep 2;29(35):10979-88 PMID: 19726656
  9. Absence epilepsy in apathetic, a spontaneous mutant mouse lacking the h channel subunit, HCN2.
    Neurobiol Dis. 2009 Mar;33(3):499-508 PMID: 19150498
  10. Augmented currents of an HCN2 variant in patients with febrile seizure syndromes.
    Ann Neurol. 2010 Apr;67(4):542-6 PMID: 20437590
  11. Molecular and functional analysis of hyperpolarization-activated pacemaker channels in the hippocampus after entorhinal cortex lesion.
    FASEB J. 2001 Dec;15(14):2689-701 PMID: 11726545
  12. Recessive loss-of-function mutation in the pacemaker HCN2 channel causing increased neuronal excitability in a patient with idiopathic generalized epilepsy.
    J Neurosci. 2011 Nov 30;31(48):17327-37 PMID: 22131395
  13. Variation in genome-wide mutation rates within and between human families.
    Nat Genet. 2011 Jun 12;43(7):712-4 PMID: 21666693
  14. Dindel: accurate indel calls from short-read data.
    Genome Res. 2011 Jun;21(6):961-73 PMID: 20980555
  15. The Role of HCN Channels on Membrane Excitability in the Nervous System.
    J Signal Transduct. 2012;2012:619747 PMID: 22934165
  16. The core Dravet syndrome phenotype.
    Epilepsia. 2011 Apr;52 Suppl 2:3-9 PMID: 21463272
  17. Fast and accurate long-read alignment with Burrows-Wheeler transform.
    Bioinformatics. 2010 Mar 1;26(5):589-95 PMID: 20080505
  18. Increased seizure severity and seizure-related death in mice lacking HCN1 channels.
    Epilepsia. 2010 Aug;51(8):1624-7 PMID: 20384728
  19. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
    Genome Res. 2010 Sep;20(9):1297-303 PMID: 20644199
  20. A behavioral role for dendritic integration: HCN1 channels constrain spatial memory and plasticity at inputs to distal dendrites of CA1 pyramidal neurons.
    Cell. 2004 Nov 24;119(5):719-32 PMID: 15550252
  21. De novo mutations in the sodium-channel gene SCN1A cause severe myoclonic epilepsy of infancy.
    Am J Hum Genet. 2001 Jun;68(6):1327-32 PMID: 11359211
  22. Nonfunctional NaV1.1 familial hemiplegic migraine mutant transformed into gain of function by partial rescue of folding defects.
    Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17546-51 PMID: 24101488
  23. Polarized and compartment-dependent distribution of HCN1 in pyramidal cell dendrites.
    Nat Neurosci. 2002 Nov;5(11):1185-93 PMID: 12389030
  24. Differential and age-dependent expression of hyperpolarization-activated, cyclic nucleotide-gated cation channel isoforms 1-4 suggests evolving roles in the developing rat hippocampus.
    Neuroscience. 2001;106(4):689-98 PMID: 11682156
  25. Persistently modified h-channels after complex febrile seizures convert the seizure-induced enhancement of inhibition to hyperexcitability.
    Nat Med. 2001 Mar;7(3):331-7 PMID: 11231632
  26. Population analysis of large copy number variants and hotspots of human genetic disease.
    Am J Hum Genet. 2009 Feb;84(2):148-61 PMID: 19166990
  27. A single sodium channel mutation produces hyper- or hypoexcitability in different types of neurons.
    Proc Natl Acad Sci U S A. 2006 May 23;103(21):8245-50 PMID: 16702558
  28. Mutations of DEPDC5 cause autosomal dominant focal epilepsies.
    Nat Genet. 2013 May;45(5):552-5 PMID: 23542701
  29. Developmental febrile seizures modulate hippocampal gene expression of hyperpolarization-activated channels in an isoform- and cell-specific manner.
    J Neurosci. 2002 Jun 1;22(11):4591-9 PMID: 12040066
  30. Towards an integrated view of HCN channel role in epilepsy.
    Curr Opin Neurobiol. 2011 Dec;21(6):873-9 PMID: 21782415
  31. The hyperpolarization-activated HCN1 channel is important for motor learning and neuronal integration by cerebellar Purkinje cells.
    Cell. 2003 Nov 26;115(5):551-64 PMID: 14651847
  32. Sporadic infantile epileptic encephalopathy caused by mutations in PCDH19 resembles Dravet syndrome but mainly affects females.
    PLoS Genet. 2009 Feb;5(2):e1000381 PMID: 19214208
  33. Absence epilepsy and sinus dysrhythmia in mice lacking the pacemaker channel HCN2.
    EMBO J. 2003 Jan 15;22(2):216-24 PMID: 12514127
  34. Gabapentin increases the hyperpolarization-activated cation current Ih in rat CA1 pyramidal cells.
    Epilepsia. 2003 Feb;44(2):150-6 PMID: 12558567
  35. Upregulation of the hyperpolarization-activated cation current in rat thalamic relay neurones by acetazolamide.
    J Physiol. 1999 Sep 1;519 Pt 2:505-14 PMID: 10457066
  36. De novo loss-of-function mutations in CHD2 cause a fever-sensitive myoclonic epileptic encephalopathy sharing features with Dravet syndrome.
    Am J Hum Genet. 2013 Nov 7;93(5):967-75 PMID: 24207121
  37. A copy number variation morbidity map of developmental delay.
    Nat Genet. 2011 Aug 14;43(9):838-46 PMID: 21841781
  38. Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.
    Nat Biotechnol. 2011 May 08;29(6):512-20 PMID: 21552272
  39. Sodium channel SCN8A (Nav1.6): properties and de novo mutations in epileptic encephalopathy and intellectual disability.
    Front Genet. 2013 Oct 28;4:213 PMID: 24194747
  40. Spectrum of SCN1A gene mutations associated with Dravet syndrome: analysis of 333 patients.
    J Med Genet. 2009 Mar;46(3):183-91 PMID: 18930999
  41. Inherited cortical HCN1 channel loss amplifies dendritic calcium electrogenesis and burst firing in a rat absence epilepsy model.
    J Physiol. 2007 Jan 15;578(Pt 2):507-25 PMID: 17095562
  42. Identification of a gene encoding a hyperpolarization-activated pacemaker channel of brain.
    Cell. 1998 May 29;93(5):717-29 PMID: 9630217
  43. Decreases in HCN mRNA expression in the hippocampus after kindling and status epilepticus in adult rats.
    Epilepsia. 2008 Oct;49(10):1686-95 PMID: 18397293
  44. Mutation analysis of the hyperpolarization-activated cyclic nucleotide-gated channels HCN1 and HCN2 in idiopathic generalized epilepsy.
    Neurobiol Dis. 2008 Jan;29(1):59-70 PMID: 17931874
  45. The Sequence Alignment/Map format and SAMtools.
    Bioinformatics. 2009 Aug 15;25(16):2078-9 PMID: 19505943
Article Info
Journal
Nature genetics
Abbr.
Nat Genet
ISSN
1546-1718
Published
2014-06-00
Epub
2014-00-20
Pages
640-5
Language
English
Region
United States
NLM ID
9216904
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]