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PMID: 2491670 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens.

Plant molecular biology ·Vol. 13 ·No. 5 ·1989-11-00 ·Pages 523-31

van Haaren MJ, Sedee NJ, de Boer HA, Schilperoort RA, Hooykaas PJ

Abstract

Left- and right-border repeats, which surround the T-region, contain two conserved regions separated by 5 bp that are not conserved. At the onset of T-DNA processing virD-encoded proteins introduce a nick in the largest of these conserved regions (12 bp) at a specific position in the bottom strand between a guanine and thymine nucleotide [2, 33]. In this paper we describe the effect of several site-directed mutations in the right-border repeat on tumorigenicity of Agrobacterium in plants. Our data show that mutations introduced directly around the nick site do not seriously affect the tumorigenicity of Agrobacterium, whereas mutations in the right part of this 12 bp conserved region do so. Furthermore, it appeared that the second conserved region (5 bp) is also essential for border activity and that the distance between the two conserved regions is important to obtain optimal border activity.

Related Genes
vir
MeSH Terms
Base Sequence DNA/genetics DNA Mutational Analysis DNA, Bacterial/genetics Molecular Sequence Data Plants/genetics,microbiology Plasmids Repetitive Sequences, Nucleic Acid Rhizobium/genetics,pathogenicity Transfection
Chemicals
DNA, Bacterial T-DNA DNA
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
van Haaren M J
Department of Plant Molecular Biology, Leiden University, Netherlands.
Sedee N J
de Boer H A
Schilperoort R A
Hooykaas P J
References (34)
34 references, click to expand
  1. Site-Specific Nick in the T-DNA Border Sequence as a Result of Agrobacterium vir Gene Expression.
    Science. 1987 Jan 30;235(4788):587-91 PMID: 17758248
  2. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
    DNA. 1985 Apr;4(2):165-70 PMID: 3996185
  3. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347-51 PMID: 7012838
  4. Octopine Ti-plasmid deletion mutants of agrobacterium tumefaciens with emphasis on the right side of the T-region.
    Plasmid. 1982 Jan;7(1):15-29 PMID: 6283573
  5. The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation.
    Gene. 1984 Dec;32(3):481-5 PMID: 6099327
  6. Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left and right T-region border fragments.
    Plant Mol Biol. 1987 Jan;8(1):95-104 PMID: 24302528
  7. T-DNA of the Agrobacterium Ti and Ri plasmids.
    Annu Rev Genet. 1982;16:357-84 PMID: 6297376
  8. Agropine in "null-type" crown gall tumors: Evidence for generality of the opine concept.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2693-7 PMID: 16592823
  9. T-DNA of Agrobacterium tumefaciens encodes an enzyme of cytokinin biosynthesis.
    Proc Natl Acad Sci U S A. 1984 Oct;81(19):5994-8 PMID: 6091129
  10. The right hand copy of the nopaline Ti-plasmid 25 bp repeat is required for tumour formation.
    Nucleic Acids Res. 1984 Aug 10;12(15):6031-41 PMID: 6473100
  11. Function of heterologous and pseudo border repeats in T region transfer via the octopine virulence system of Agrobacterium tumefaciens.
    Plant Mol Biol. 1988 Nov;11(6):773-81 PMID: 24272627
  12. The genetic and transcriptional organization of the vir region of the A6 Ti plasmid of Agrobacterium tumefaciens.
    EMBO J. 1986 Jul;5(7):1445-54 PMID: 3017694
  13. Overdrive is a T-region transfer enhancer which stimulates T-strand production in Agrobacterium tumefaciens.
    Nucleic Acids Res. 1987 Nov 11;15(21):8983-97 PMID: 3684577
  14. A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity.
    Nature. 1985 Jul 25-31;316(6026):371-2 PMID: 2991768
  15. Cooperative interaction of Agrobacterium VirE2 protein with single-stranded DNA: implications for the T-DNA transfer process.
    Proc Natl Acad Sci U S A. 1989 Feb;86(4):1193-7 PMID: 2919168
  16. Interactions between octopine and nopaline plasmids in Agrobacterium tumefaciens.
    J Bacteriol. 1980 Sep;143(3):1295-306 PMID: 7410319
  17. A functional map of the replicator region of the octopine Ti plasmid.
    Plasmid. 1982 Mar;7(2):119-32 PMID: 6281832
  18. Identification and genetic analysis of an Agrobacterium tumefaciens chromosomal virulence region.
    J Bacteriol. 1985 Mar;161(3):850-60 PMID: 2982791
  19. Processing of the T-DNA of Agrobacterium tumefaciens generates border nicks and linear, single-stranded T-DNA.
    J Bacteriol. 1987 Mar;169(3):1046-55 PMID: 3029014
  20. Oligonucleotide-directed mutagenesis using M13-derived vectors: an efficient and general procedure for the production of point mutations in any fragment of DNA.
    Nucleic Acids Res. 1982 Oct 25;10(20):6487-500 PMID: 6757864
  21. Thermo-inducible expression of cloned early genes of bacteriophage Mu.
    Gene. 1979 Sep;7(1):33-50 PMID: 387527
  22. Nucleotide sequence of the T-DNA region from theA grobacterium tumefaciens octopine Ti plasmid pTi15955.
    Plant Mol Biol. 1983 Nov;2(6):335-50 PMID: 24318453
  23. Activation of Agrobacterium tumefaciens vir gene expression generates multiple single-stranded T-strand molecules from the pTiA6 T-region: requirement for 5' virD gene products.
    EMBO J. 1987 Apr;6(4):857-63 PMID: 3595560
  24. The F plasmid origin of transfer: DNA sequence of wild-type and mutant origins and location of origin-specific nicks.
    EMBO J. 1984 May;3(5):1175-80 PMID: 6329741
  25. Negative supercoiling induces spontaneous unwinding of a bacterial promoter.
    EMBO J. 1985 Apr;4(4):1025-32 PMID: 2990904
  26. Analysis of TR-DNA/plant junctions in the genome of a Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4.
    Plant Mol Biol. 1989 Jan;12(1):75-85 PMID: 24272719
  27. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  28. The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease.
    Cell. 1986 Nov 7;47(3):471-7 PMID: 3021341
  29. Mutational analysis of the virulence region of an Agrobacterium tumefaciens Ti plasmid.
    J Bacteriol. 1983 Feb;153(2):878-83 PMID: 6296058
  30. Crown gall oncogenesis: evidence that a T-DNA gene from the Agrobacterium Ti plasmid pTiA6 encodes an enzyme that catalyzes synthesis of indoleacetic acid.
    Proc Natl Acad Sci U S A. 1984 Aug;81(16):5071-5 PMID: 6089175
  31. Short direct repeats flank the T-DNA on a nopaline Ti plasmid.
    Proc Natl Acad Sci U S A. 1982 Oct;79(20):6322-6 PMID: 16593241
  32. A comparison of virulence determinants in an octopine Ti plasmid, a nopaline Ti plasmid, and an Ri plasmid by complementation analysis of Agrobacterium tumefaciens mutants.
    Plasmid. 1984 May;11(3):195-205 PMID: 6087390
  33. Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid.
    EMBO J. 1986 Jun;5(6):1137-42 PMID: 15966101
  34. Octopine and nopaline synthesis and breakdown genetically controlled by a plasmid of Agrobacterium tumefaciens.
    Mol Gen Genet. 1976 May 7;145(2):177-81 PMID: 934053
Article Info
Journal
Plant molecular biology
Abbr.
Plant Mol Biol
ISSN
0167-4412
Published
1989-11-00
Pages
523-31
Language
English
Region
Netherlands
NLM ID
9106343
Subset
IM
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