Home LiteratureArticle Details
PMID: 25313861 Published · epublish English Journal Article Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

A conserved endoplasmic reticulum membrane protein complex (EMC) facilitates phospholipid transfer from the ER to mitochondria.

PLoS biology ·Vol. 12 ·No. 10 ·2014-10-00 ·Pages e1001969

Lahiri S, Chao JT, Tavassoli S, Wong AK, Choudhary V, Young BP, Loewen CJ, Prinz WA

Abstract

Mitochondrial membrane biogenesis and lipid metabolism require phospholipid transfer from the endoplasmic reticulum (ER) to mitochondria. Transfer is thought to occur at regions of close contact of these organelles and to be nonvesicular, but the mechanism is not known. Here we used a novel genetic screen in S. cerevisiae to identify mutants with defects in lipid exchange between the ER and mitochondria. We show that a strain missing multiple components of the conserved ER membrane protein complex (EMC) has decreased phosphatidylserine (PS) transfer from the ER to mitochondria. Mitochondria from this strain have significantly reduced levels of PS and its derivative phosphatidylethanolamine (PE). Cells lacking EMC proteins and the ER-mitochondria tethering complex called ERMES (the ER-mitochondria encounter structure) are inviable, suggesting that the EMC also functions as a tether. These defects are corrected by expression of an engineered ER-mitochondrial tethering protein that artificially tethers the ER to mitochondria. EMC mutants have a significant reduction in the amount of ER tethered to mitochondria even though ERMES remained intact in these mutants, suggesting that the EMC performs an additional tethering function to ERMES. We find that all Emc proteins interact with the mitochondrial translocase of the outer membrane (TOM) complex protein Tom5 and this interaction is important for PS transfer and cell growth, suggesting that the EMC forms a tether by associating with the TOM complex. Together, our findings support that the EMC tethers ER to mitochondria, which is required for phospholipid synthesis and cell growth.

MeSH Terms
Endoplasmic Reticulum/metabolism Genome-Wide Association Study Mitochondria/metabolism Mitochondrial Membrane Transport Proteins/metabolism Mitochondrial Precursor Protein Import Complex Proteins Phosphatidylserines/metabolism Saccharomyces cerevisiae Saccharomyces cerevisiae Proteins/metabolism
Chemicals
Mitochondrial Membrane Transport Proteins Mitochondrial Precursor Protein Import Complex Proteins Phosphatidylserines Saccharomyces cerevisiae Proteins TOM5 protein, S cerevisiae
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Lahiri Sujoy
Laboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Chao Jesse T
Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Tavassoli Shabnam
Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Wong Andrew K O
Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Choudhary Vineet
Laboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Young Barry P
Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Loewen Christopher J R
Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Prinz William A
Laboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Conflict of Interest

The authors have declared that no competing interests exist.

References (55)
55 references, click to expand
  1. An in vivo map of the yeast protein interactome.
    Science. 2008 Jun 13;320(5882):1465-70 PMID: 18467557
  2. Lipid transport between the endoplasmic reticulum and mitochondria.
    Cold Spring Harb Perspect Biol. 2013 Jun 01;5(6): PMID: 23732475
  3. Topology of 1-acyl-sn-glycerol-3-phosphate acyltransferases SLC1 and ALE1 and related membrane-bound O-acyltransferases (MBOATs) of Saccharomyces cerevisiae.
    J Biol Chem. 2011 Oct 21;286(42):36438-47 PMID: 21849510
  4. Tom7 modulates the dynamics of the mitochondrial outer membrane translocase and plays a pathway-related role in protein import.
    EMBO J. 1996 May 1;15(9):2125-37 PMID: 8641278
  5. FunSpec: a web-based cluster interpreter for yeast.
    BMC Bioinformatics. 2002 Nov 13;3:35 PMID: 12431279
  6. Chaperone-mediated coupling of endoplasmic reticulum and mitochondrial Ca2+ channels.
    J Cell Biol. 2006 Dec 18;175(6):901-11 PMID: 17178908
  7. Secretory pathway genes assessed by high-throughput microscopy and synthetic genetic array analysis.
    Mol Biosyst. 2011 Sep;7(9):2589-98 PMID: 21731954
  8. Endoplasmic reticulum oxidoreductin 1-lbeta (ERO1-Lbeta), a human gene induced in the course of the unfolded protein response.
    J Biol Chem. 2000 Aug 4;275(31):23685-92 PMID: 10818100
  9. Mitochondrial protein import: common principles and physiological networks.
    Biochim Biophys Acta. 2013 Feb;1833(2):274-85 PMID: 22683763
  10. Gem1 and ERMES do not directly affect phosphatidylserine transport from ER to mitochondria or mitochondrial inheritance.
    Traffic. 2012 Jun;13(6):880-90 PMID: 22409400
  11. Mitofusin 2 tethers endoplasmic reticulum to mitochondria.
    Nature. 2008 Dec 4;456(7222):605-10 PMID: 19052620
  12. Balony: a software package for analysis of data generated by synthetic genetic array experiments.
    BMC Bioinformatics. 2013 Dec 04;14:354 PMID: 24305553
  13. Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae.
    Yeast. 2004 Jun;21(8):661-70 PMID: 15197731
  14. Nonvesicular phospholipid transfer between peroxisomes and the endoplasmic reticulum.
    Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15785-90 PMID: 18836080
  15. The genetic landscape of a cell.
    Science. 2010 Jan 22;327(5964):425-31 PMID: 20093466
  16. Separation and determination of phospholipids in biological samples by high-performance liquid chromatography.
    J Chromatogr Sci. 2003 Mar;41(3):142-4 PMID: 12725697
  17. Cloning of a gene (PSD1) encoding phosphatidylserine decarboxylase from Saccharomyces cerevisiae by complementation of an Escherichia coli mutant.
    J Biol Chem. 1993 Nov 25;268(33):24580-90 PMID: 8227017
  18. Integration of biological networks and gene expression data using Cytoscape.
    Nat Protoc. 2007;2(10):2366-82 PMID: 17947979
  19. The ancient and widespread nature of the ER-mitochondria encounter structure.
    Mol Biol Evol. 2013 Sep;30(9):2044-9 PMID: 23813918
  20. Structural and functional link between the mitochondrial network and the endoplasmic reticulum.
    Int J Biochem Cell Biol. 2009 Oct;41(10):1817-27 PMID: 19389485
  21. Synthetic genetic array analysis in Saccharomyces cerevisiae.
    Methods Mol Biol. 2006;313:171-92 PMID: 16118434
  22. Phosphatidylserine decarboxylase from Saccharomyces cerevisiae. Isolation of mutants, cloning of the gene, and creation of a null allele.
    J Biol Chem. 1993 Oct 5;268(28):21416-24 PMID: 8407984
  23. Studying the behavior of mitochondria.
    Methods Enzymol. 2002;351:381-93 PMID: 12073358
  24. Upregulated function of mitochondria-associated ER membranes in Alzheimer disease.
    EMBO J. 2012 Nov 5;31(21):4106-23 PMID: 22892566
  25. Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
    Biochim Biophys Acta. 2004 Nov 8;1686(1-2):161-8 PMID: 15522832
  26. Genetic and biochemical analysis of non-vesicular lipid traffic.
    Annu Rev Biochem. 2009;78:827-56 PMID: 19489735
  27. Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae.
    Mol Biol Cell. 2002 Mar;13(3):847-53 PMID: 11907266
  28. Making heads or tails of phospholipids in mitochondria.
    J Cell Biol. 2011 Jan 10;192(1):7-16 PMID: 21220505
  29. The mitochondrial receptor complex: the small subunit Mom8b/Isp6 supports association of receptors with the general insertion pore and transfer of preproteins.
    Mol Cell Biol. 1995 Nov;15(11):6196-205 PMID: 7565772
  30. Viral product trafficking to mitochondria, mechanisms and roles in pathogenesis.
    Infect Disord Drug Targets. 2012 Feb;12(1):18-37 PMID: 22034933
  31. Phospholipid synthesis and lipid composition of subcellular membranes in the unicellular eukaryote Saccharomyces cerevisiae.
    J Bacteriol. 1991 Mar;173(6):2026-34 PMID: 2002005
  32. Phosphatidic acid is a pH biosensor that links membrane biogenesis to metabolism.
    Science. 2010 Aug 27;329(5995):1085-8 PMID: 20798321
  33. Staying in touch: the molecular era of organelle contact sites.
    Trends Biochem Sci. 2011 Nov;36(11):616-23 PMID: 21958688
  34. The Tim core complex defines the number of mitochondrial translocation contact sites and can hold arrested preproteins in the absence of matrix Hsp70-Tim44.
    EMBO J. 1997 Sep 1;16(17):5408-19 PMID: 9312000
  35. Phosphatidylserine decarboxylase 2 of Saccharomyces cerevisiáe. Cloning and mapping of the gene, heterologous expression, and creation of the null allele.
    J Biol Chem. 1995 Mar 17;270(11):6071-80 PMID: 7890740
  36. Separation of yeast phospholipids using one-dimensional thin-layer chromatography.
    Anal Biochem. 2005 Mar 1;338(1):162-4 PMID: 15707948
  37. Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum.
    Science. 2009 Mar 27;323(5922):1693-7 PMID: 19325107
  38. A yeast phenomic model for the gene interaction network modulating CFTR-ΔF508 protein biogenesis.
    Genome Med. 2012 Dec 27;4(12):103 PMID: 23270647
  39. An ER-mitochondria tethering complex revealed by a synthetic biology screen.
    Science. 2009 Jul 24;325(5939):477-81 PMID: 19556461
  40. Phosphatidylserine transport to the mitochondria is regulated by ubiquitination.
    J Biol Chem. 2002 Dec 27;277(52):51033-42 PMID: 12393893
  41. Mitochondrial membrane biogenesis: phospholipids and proteins go hand in hand.
    J Cell Biol. 2009 Feb 23;184(4):469-72 PMID: 19237595
  42. ER-shaping proteins facilitate lipid exchange between the ER and mitochondria in S. cerevisiae.
    J Cell Sci. 2012 Oct 15;125(Pt 20):4791-9 PMID: 22797914
  43. Association between the endoplasmic reticulum and mitochondria of yeast facilitates interorganelle transport of phospholipids through membrane contact.
    Eur J Biochem. 1999 Sep;264(2):545-53 PMID: 10491102
  44. The molecular hug between the ER and the mitochondria.
    Curr Opin Cell Biol. 2013 Aug;25(4):443-8 PMID: 23478213
  45. Lipid trafficking sans vesicles: where, why, how?
    Cell. 2010 Dec 10;143(6):870-4 PMID: 21145454
  46. Defining human ERAD networks through an integrative mapping strategy.
    Nat Cell Biol. 2011 Nov 27;14(1):93-105 PMID: 22119785
  47. Organization and function of membrane contact sites.
    Biochim Biophys Acta. 2013 Nov;1833(11):2526-41 PMID: 23380708
  48. Yeast sterols: yeast mutants as tools for the study of sterol metabolism.
    Methods Enzymol. 1985;111:333-46 PMID: 3897776
  49. Where the endoplasmic reticulum and the mitochondrion tie the knot: the mitochondria-associated membrane (MAM).
    Biochim Biophys Acta. 2013 Jan;1833(1):213-24 PMID: 22575682
  50. Lipid transfer and signaling at organelle contact sites: the tip of the iceberg.
    Curr Opin Cell Biol. 2011 Aug;23(4):458-63 PMID: 21555211
  51. Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex.
    Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):E1055-63 PMID: 23431131
  52. Metabolism and regulation of glycerolipids in the yeast Saccharomyces cerevisiae.
    Genetics. 2012 Feb;190(2):317-49 PMID: 22345606
  53. ERMES-mediated ER-mitochondria contacts: molecular hubs for the regulation of mitochondrial biology.
    J Cell Sci. 2010 May 1;123(Pt 9):1389-93 PMID: 20410371
  54. Phosphatidylserine decarboxylase 1 (Psd1) promotes mitochondrial fusion by regulating the biophysical properties of the mitochondrial membrane and alternative topogenesis of mitochondrial genome maintenance protein 1 (Mgm1).
    J Biol Chem. 2012 Nov 23;287(48):40131-9 PMID: 23045528
  55. Structure of a lipid-bound extended synaptotagmin indicates a role in lipid transfer.
    Nature. 2014 Jun 26;510(7506):552-5 PMID: 24847877
Article Info
Journal
PLoS biology
Abbr.
PLoS Biol
ISSN
1545-7885
Published
2014-10-00
Epub
2014-00-14
Pages
e1001969
Language
English
Region
United States
NLM ID
101183755
PMCID
PMC4196738
Subset
IM
Grants
Canadian Institutes of Health Research · Canada
Intramural NIH HHS · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]