Home LiteratureArticle Details
PMID: 2788410 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The phototrophic bacterium Rhodopseudomonas capsulata sp108 encodes an indigenous class A beta-lactamase.

The Biochemical journal ·Vol. 260 ·No. 3 ·1989-06-15 ·Pages 803-12

Campbell JI, Scahill S, Gibson T, Ambler RP

Abstract

The nucleotide sequence of a 2.37 kb DNA fragment derived from cloning a total DNA digest of Rhodopseudomonas capsulata sp108 was determined. The DNA codes for a beta-lactamase, a protein showing sequence similarity to the ampR protein of Enterobacter cloacae and an unidentified open reading frame. Hybridization experiments with a probe carrying DNA from within the beta-lactamase gene suggests a chromosomal location for the coding sequences in strain sp108 and in sp109, a penicillin-sensitive revertant of sp108 in which the enzyme is not inducible. A protein-sequence comparison of the deduced amino acid sequence of the Rps. capsulata beta-lactamase indicates that it is a Class A enzyme and that its sequence can be aligned with those of the characterized beta-lactamases from Staphylococcus aureus, Bacillus licheniformis and the Escherichia coli plasmid (R-TEM enzyme), with only a few insertions or deletions. The corresponding DNA sequence is, however, characteristically rhodopseudomonad, suggesting that it is not a recently transposed gene.

MeSH Terms
Amino Acid Sequence Base Sequence DNA, Bacterial Genes, Bacterial Molecular Sequence Data Rhodopseudomonas/enzymology,genetics beta-Lactamases/classification,genetics
Chemicals
DNA, Bacterial beta-Lactamases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Campbell J I
Department of Molecular Biology, University of Edinburgh, Scotland.
Scahill S
Gibson T
Ambler R P
References (44)
44 references, click to expand
  1. Active site of staphylococcal beta-lactamase.
    Philos Trans R Soc Lond B Biol Sci. 1980 May 16;289(1036):370-2 PMID: 6109335
  2. Cytochrome c(2) is not essential for photosynthetic growth of Rhodopseudomonas capsulata.
    Proc Natl Acad Sci U S A. 1986 Apr;83(7):2012-6 PMID: 16593675
  3. Partial amino acid sequence of penicillinase coded by Escherichia coli plasmid R6K.
    Proc Natl Acad Sci U S A. 1978 Aug;75(8):3732-6 PMID: 358199
  4. The genetic basis of the spread of beta-lactamase synthesis among plasmid-carrying bacteria.
    Philos Trans R Soc Lond B Biol Sci. 1980 May 16;289(1036):349-59 PMID: 6109330
  5. Evidence against use of bacterial amino acid sequence data for construction of all-inclusive phylogenetic trees.
    Proc Natl Acad Sci U S A. 1986 Jan;83(2):217-20 PMID: 3001728
  6. The partial amino acid sequence of the extracellular beta-lactamase I of Bacillus cereus 569/H.
    Biochem J. 1975 May;147(2):313-26 PMID: 810136
  7. Transfer of chromosomal genes mediated by plasmid r68.45 in Rhodopseudomonas sphaeroides.
    J Bacteriol. 1977 Aug;131(2):526-32 PMID: 407213
  8. Bacterial resistance to beta-lactam antibiotics: crystal structure of beta-lactamase from Staphylococcus aureus PC1 at 2.5 A resolution.
    Science. 1987 May 8;236(4802):694-701 PMID: 3107125
  9. Characterization of Rhodopseudomonas capsulata.
    Arch Microbiol. 1975 Nov 7;105(3):207-16 PMID: 1103769
  10. The crystal structure of the beta-lactamase of Streptomyces albus G at 0.3 nm resolution.
    Biochem J. 1987 Aug 1;245(3):911-3 PMID: 3499147
  11. The protein identification resource (PIR).
    Nucleic Acids Res. 1986 Jan 10;14(1):11-5 PMID: 3945547
  12. Extrachromosomal deoxyribonucleic acid in wild-type and photosynthetically incompetent strains of Rhodopseudomonas spheroides.
    J Bacteriol. 1976 Mar;125(3):1180-7 PMID: 1082886
  13. On the origin of bacterial resistance to penicillin: comparison of a beta-lactamase and a penicillin target.
    Science. 1986 Mar 21;231(4744):1429-31 PMID: 3082007
  14. Regulatory components in Citrobacter freundii ampC beta-lactamase induction.
    Proc Natl Acad Sci U S A. 1985 Jul;82(14):4620-4 PMID: 2991883
  15. Rhodopseudomonas blastica atp operon. Nucleotide sequence and transcription.
    J Mol Biol. 1984 Oct 25;179(2):185-214 PMID: 6209404
  16. Inducible cephalosporinase production in clinical isolates of Enterobacter cloacae is controlled by a regulatory gene that has been deleted from Escherichia coli.
    EMBO J. 1986 Dec 20;5(13):3709-14 PMID: 3030737
  17. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.
    Nucleic Acids Res. 1982 Aug 11;10(15):4731-51 PMID: 7133997
  18. A computer program to enter DNA gel reading data into a computer.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):499-503 PMID: 6546430
  19. Dna-Dna hybridization of Rhodopseudomonas capsulata, Rhodopseudomonas sphaeroides and Rhodopseudomonas sulfidophila strains.
    Arch Microbiol. 1981 Jan;128(3):271-4 PMID: 6971081
  20. Penicillinase synthesis controlled by infectious R factors in Enterobacteriaceae.
    Nature. 1965 Oct 16;208(5007):239-41 PMID: 5326330
  21. Molecular genetic analysis of cephalosporinase production and its role in beta-lactam resistance in clinical isolates of Enterobacter cloacae.
    Antimicrob Agents Chemother. 1987 Feb;31(2):295-9 PMID: 3032094
  22. Penicillinase from Bacillus licheniformis: nucleotide sequence of the gene and implications for the biosynthesis of a secretory protein in a Gram-positive bacterium.
    Nucleic Acids Res. 1981 Jun 11;9(11):2577-88 PMID: 6269055
  23. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster.
    Nature. 1983 Aug 4-10;304(5925):412-7 PMID: 6410283
  24. Rapid and sensitive protein similarity searches.
    Science. 1985 Mar 22;227(4693):1435-41 PMID: 2983426
  25. Chemical structure of bacterial penicillinases.
    Nature. 1969 Apr 5;222(5188):24-6 PMID: 4975648
  26. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  27. Close evolutionary relationship between the chromosomally encoded beta-lactamase gene of Klebsiella pneumoniae and the TEM beta-lactamase gene mediated by R plasmids.
    FEBS Lett. 1986 Oct 20;207(1):69-74 PMID: 3533626
  28. The making of strand-specific M13 probes.
    Gene. 1982 Mar;17(3):271-7 PMID: 7049837
  29. Codon preference and its use in identifying protein coding regions in long DNA sequences.
    Nucleic Acids Res. 1982 Jan 11;10(1):141-56 PMID: 7063399
  30. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in vivo synthesis.
    J Biol Chem. 1982 Dec 25;257(24):15110-21 PMID: 6184370
  31. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  32. Characteristics of lambda p4, a lambda derivative containing 9 per cent excess DNA.
    Virology. 1972 Nov;50(2):373-80 PMID: 4629043
  33. Lambdoid phages that simplify the recovery of in vitro recombinants.
    Mol Gen Genet. 1977 Jan 7;150(1):53-61 PMID: 319344
  34. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  35. Penicillin-binding proteins and the mechanism of action of beta-lactam antibiotics.
    Annu Rev Biochem. 1983;52:825-69 PMID: 6351730
  36. The amino acid sequence of the cytochrome c2 from the phototrophic bacterium Rhodopseudomonas globiformis.
    Biochem J. 1987 Aug 15;246(1):115-20 PMID: 2823792
  37. The structure of beta-lactamases.
    Philos Trans R Soc Lond B Biol Sci. 1980 May 16;289(1036):321-31 PMID: 6109327
  38. The amino acid sequence of Staphylococcus aureus penicillinase.
    Biochem J. 1975 Nov;151(2):197-218 PMID: 1218078
  39. DNA sequence analysis of the transposon Tn3: three genes and three sites involved in transposition of Tn3.
    Cell. 1979 Dec;18(4):1153-63 PMID: 391406
  40. A vector that uses phage signals for efficient synthesis of proteins in Escherichia coli.
    J Mol Appl Genet. 1983;2(1):1-10 PMID: 6302192
  41. Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene.
    J Bacteriol. 1986 Nov;168(2):962-72 PMID: 3023293
  42. Mechanism of action of penicillins: a proposal based on their structural similarity to acyl-D-alanyl-D-alanine.
    Proc Natl Acad Sci U S A. 1965 Oct;54(4):1133-41 PMID: 5219821
  43. Sequence of the OXA2 beta-lactamase: comparison with other penicillin-reactive enzymes.
    FEBS Lett. 1985 Oct 21;191(1):39-44 PMID: 3876949
  44. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
Article Info
Journal
The Biochemical journal
Abbr.
Biochem J
ISSN
0264-6021
Published
1989-06-15
Pages
803-12
Language
English
Region
England
NLM ID
2984726R
PMCID
PMC1138748
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]