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PMID: 293725 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Internal motions in DNA.

Hogan ME, Jardetzky O

Abstract

We have measured the 31P and 1H NMR parameters of fractionated double-stranded DNA fragments 600, 300, and 150 base pairs long. The results indicate that, inside an intact double helix, both the deoxyribose and the sugar-phosphate backbone of the helix fluctuate substantially from their equilibrium geometry. The time constant for those coupled motions is of the order of 1 nsec.

MeSH Terms
DNA/physiology Deoxyribose Magnetic Resonance Spectroscopy Models, Theoretical Molecular Weight Motion Nucleic Acid Conformation Phosphates Temperature
Chemicals
Phosphates Deoxyribose DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Hogan M E
Jardetzky O
References (18)
18 references, click to expand
  1. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature.
    J Mol Biol. 1962 Jul;5:109-18 PMID: 14470099
  2. Determination of DNA base compositions from melting profiles in dilute buffers.
    Biopolymers. 1969;7(4):503-16 PMID: 5785241
  3. 31P NMR studies of the solution structure and dynamics of nucleosomes and DNA.
    Nucleic Acids Res. 1979 Apr;6(4):1607-16 PMID: 450708
  4. The conformation of DNA and protein within chromatin subunits.
    FEBS Lett. 1977 Oct 1;82(1):63-8 PMID: 913577
  5. 31P magnetic resonance of DNA in nucleosome core particles of chromatin.
    Nature. 1978 Mar 9;272(5649):134-8 PMID: 628441
  6. Conformational properties of purine-pyrimidine and pyrimidine-purine dinucleoside monophosphates.
    Biochemistry. 1977 May 3;16(9):1977-87 PMID: 870035
  7. Determination of rotational correlation times of proteins in solution from carbon-13 spin-lattice relaxation measurements. Effect of magnetic field strength and anisotropic rotation.
    J Am Chem Soc. 1976 Dec 8;98(25):8250-4 PMID: 993524
  8. Mapping DNAase l-susceptible sites in nucleosomes labeled at the 5' ends.
    Cell. 1976 Oct;9(2):347-53 PMID: 975247
  9. Transient electric dichroism of rod-like DNA molecules.
    Proc Natl Acad Sci U S A. 1978 Jan;75(1):195-9 PMID: 272634
  10. Thermal denaturation of nucleosomal core particles.
    Nucleic Acids Res. 1978 Jan;5(1):139-60 PMID: 643604
  11. Proton nuclear magnetic resonance investigations of the nucleation and propagation reactions associated with the helix-coil transition of d-ApTpGpCpApT in H2O solution.
    Biochemistry. 1975 Jun 17;14(12):2656-60 PMID: 238569
  12. Nuclear magnetic resonance studies of the helix-coil transition of poly (dA-dT) in aqueous solution.
    Proc Natl Acad Sci U S A. 1976 Mar;73(3):674-8 PMID: 1062778
  13. Specificity of the S1 nuclease from Aspergillus oryzae.
    J Biol Chem. 1975 Nov 25;250(22):8848-55 PMID: 171268
  14. The ultraviolet circular dichroism of some natural DNAs and an analysis of the spectra for sequence information.
    Biopolymers. 1972;11(4):853-79 PMID: 5028516
  15. Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7.
    J Mol Biol. 1975 Dec 25;99(4):549-65 PMID: 1214299
  16. Chain length determination of small double- and single-stranded DNA molecules by polyacrylamide gel electrophoresis.
    Biochemistry. 1975 Aug 26;14(17):3787-94 PMID: 1174504
  17. Helix formation by d(TA) oligomers. 3. Electrostatic effects.
    J Mol Biol. 1970 Dec 28;54(3):401-15 PMID: 5492017
  18. NUCLEIC ACIDS: A NUCLEAR MAGNETIC RESONANCE STUDY.
    Science. 1964 Jun 5;144(3623):1234-7 PMID: 14150330
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1979-12-00
Pages
6341-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC411860
Subset
IM
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