Home LiteratureArticle Details
PMID: 2994007 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The nucleotide sequence of the tnpA gene completes the sequence of the Pseudomonas transposon Tn501.

Nucleic acids research ·Vol. 13 ·No. 15 ·1985-08-12 ·Pages 5657-69

Brown NL, Winnie JN, Fritzinger D, Pridmore RD

Abstract

The nucleotide sequence of the gene (tnpA) which codes for the transposase of transposon Tn501 has been determined. It contains an open reading frame for a polypeptide of Mr = 111,500, which terminates within the inverted repeat sequence of the transposon. The reading frame would be transcribed in the same direction as the mercury-resistance genes and the tnpR gene. The amino acid sequence predicted from this reading frame shows 32% identity with that of the transposase of the related transposon Tn3. The C-terminal regions of these two polypeptides show slightly greater homology than the N-terminal regions when conservative amino acid substitutions are considered. With this sequence determination, the nucleotide sequence of Tn501 is fully defined. The main features of the sequence are briefly presented.

MeSH Terms
Amino Acid Sequence Base Sequence Codon DNA Transposable Elements DNA, Bacterial/genetics Genes, Bacterial Nucleotidyltransferases/genetics Pseudomonas aeruginosa/genetics Transcription, Genetic Transposases
Chemicals
Codon DNA Transposable Elements DNA, Bacterial Nucleotidyltransferases Transposases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Brown N L
Winnie J N
Fritzinger D
Pridmore R D
References (36)
36 references, click to expand
  1. Characterization of a translocation unit encoding resistance to mercuric ions that occurs on a nonconjugative plasmid in Pseudomonas aeruginosa.
    J Bacteriol. 1977 Mar;129(3):1227-33 PMID: 403173
  2. Mercuric reductase structural genes from plasmid R100 and transposon Tn501: functional domains of the enzyme.
    Gene. 1985;34(2-3):253-62 PMID: 2989109
  3. Dissection of the transposition process: a transposon-encoded site-specific recombination system.
    Mol Gen Genet. 1979 Oct 1;175(3):267-74 PMID: 392228
  4. A new computer method for the storage and manipulation of DNA gel reading data.
    Nucleic Acids Res. 1980 Aug 25;8(16):3673-94 PMID: 7433103
  5. Nucleotide sequences at the ends of the mercury resistance transposon, Tn501.
    Nucleic Acids Res. 1980 May 10;8(9):1933-45 PMID: 6253951
  6. A system for shotgun DNA sequencing.
    Nucleic Acids Res. 1981 Jan 24;9(2):309-21 PMID: 6259625
  7. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  8. The tetracycline resistance transposons Tn1721 and Tn1771 have three 38-base-pair repeats and generate five-base-pair direct repeats.
    Mol Gen Genet. 1981;181(1):87-94 PMID: 6261087
  9. Purification of the Tn3 transposase and analysis of its binding to DNA.
    J Biol Chem. 1981 May 25;256(10):4687-90 PMID: 6262296
  10. The transposons Tn501(Hg) and Tn1721(Tc) are related.
    Genet Res. 1981 Jun;37(3):285-9 PMID: 6266914
  11. Transposon-specified site-specific recombination.
    Proc Natl Acad Sci U S A. 1982 Jan;79(1):46-50 PMID: 6275390
  12. Inter-replicon transposition of Tn1/3 occurs in two sequential genetically separable steps.
    Nature. 1982 Feb 18;295(5850):626-8 PMID: 6276779
  13. Transposable elements in prokaryotes.
    Annu Rev Genet. 1981;15:341-404 PMID: 6279020
  14. An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.
    Nucleic Acids Res. 1982 May 11;10(9):2951-61 PMID: 7099970
  15. Nucleotide sequence of gamma delta resolvase gene and demonstration that its gene product acts as a repressor of transcription.
    Nature. 1982 Nov 25;300(5890):381-3 PMID: 6292730
  16. Complementation of transposition of tnpA mutants of Tn3, Tn21, Tn501, and Tn1721.
    Plasmid. 1982 Nov;8(3):276-86 PMID: 6294711
  17. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  18. Evolution of complex resistance transposons from an ancestral mercury transposon.
    J Bacteriol. 1983 Mar;153(3):1432-8 PMID: 6298184
  19. Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res. 1983 Apr 25;11(8):2237-55 PMID: 6344016
  20. Tn5 insertion mutations in the mercuric ion resistance genes derived from plasmid R100.
    J Bacteriol. 1983 Aug;155(2):690-703 PMID: 6307976
  21. Transposon Tn1721: site-specific recombination generates deletions and inversions.
    Mol Gen Genet. 1983;190(2):300-8 PMID: 6308391
  22. Nucleotide sequence of a gene from the Pseudomonas transposon Tn501 encoding mercuric reductase.
    Biochemistry. 1983 Aug 16;22(17):4089-95 PMID: 6311258
  23. DNA sequences of and complementation by the tnpR genes of Tn21, Tn501 and Tn1721.
    Mol Gen Genet. 1983;191(2):189-93 PMID: 6312271
  24. Fine structure of transposition genes on Tn2603 and complementation of its tnpA and tnpR mutations by related transposons.
    Mol Gen Genet. 1983;191(3):442-50 PMID: 6314094
  25. Resolution of a hybrid cointegrate between transposons Tn501 and Tn1721 defines the recombination site.
    Mol Gen Genet. 1984;193(1):162-6 PMID: 6318048
  26. Graphic methods to determine the function of nucleic acid sequences.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):521-38 PMID: 6364040
  27. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
    EMBO J. 1982;1(8):945-51 PMID: 6329717
  28. Protein-DNA recognition.
    Annu Rev Biochem. 1984;53:293-321 PMID: 6236744
  29. Protein-nucleic acid interactions in transcription: a molecular analysis.
    Annu Rev Biochem. 1984;53:389-446 PMID: 6206781
  30. Mercuric ion-resistance operons of plasmid R100 and transposon Tn501: the beginning of the operon including the regulatory region and the first two structural genes.
    Proc Natl Acad Sci U S A. 1984 Oct;81(19):5975-9 PMID: 6091128
  31. Evolutionary relationship between Tn21-like elements and pBP201, a plasmid from Klebsiella pneumoniae mediating resistance to gentamicin and eight other drugs.
    Mol Gen Genet. 1984;197(1):109-19 PMID: 6096667
  32. A Tn21 terminal sequence within Tn501: complementation of tnpA gene function and transposon evolution.
    Mol Gen Genet. 1984;197(3):497-502 PMID: 6098802
  33. The EMBL nucleotide sequence data library.
    Biochem Soc Trans. 1984 Dec;12(6):1011-4 PMID: 6530028
  34. ATP-dependent specific binding of Tn3 transposase to Tn3 inverted repeats.
    Nature. 1985 Apr 11-17;314(6011):556-8 PMID: 2986006
  35. Restriction and modification enzymes and their recognition sequences.
    Nucleic Acids Res. 1985;13 Suppl:r165-200 PMID: 2987885
  36. DNA sequence analysis of the transposon Tn3: three genes and three sites involved in transposition of Tn3.
    Cell. 1979 Dec;18(4):1153-63 PMID: 391406
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1985-08-12
Pages
5657-69
Language
English
Region
England
NLM ID
0411011
PMCID
PMC321896
Subset
IM
Databases
GENBANK
X02803
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]