Home LiteratureArticle Details
PMID: 2997721 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The 5'-flanking regions of three pea legumin genes: comparison of the DNA sequences.

Nucleic acids research ·Vol. 13 ·No. 18 ·1985-09-25 ·Pages 6733-43

Lycett GW, Croy RR, Shirsat AH, Richards DM, Boulter D

Abstract

Approximately 1200 nucleotides of sequence data from the promoter and 5'-flanking regions of each of three pea (Pisum sativum L.) legumin genes (legA, legB and legC) are presented. The promoter regions of all three genes were found to be identical including the "TATA box", and "CAAT box', and sequences showing homology to the SV40 enhancers. The legA sequence begins to diverge from the others about 300bp from the start codon, whereas the other two genes remain identical for another 550bp. The regions of partial homology exhibit deletions or insertions and some short, comparatively well conserved sequences. The significance of these features is discussed in terms of evolutionary mechanisms and their possible functional roles. The legC gene contains a region that may potentially form either of two mutually exclusive stem-loop structures, one of which has a stem 42bp long, which suggests that it could be fairly stable. We suggest that a mechanism of switching between such alternative structures may play some role in gene control or may represent the insertion of a transposable element.

MeSH Terms
Base Sequence Biological Evolution Cloning, Molecular DNA Restriction Enzymes DNA Transposable Elements Fabaceae/genetics Genes Nucleic Acid Conformation Nucleic Acid Hybridization Plant Proteins Plant Proteins, Dietary/genetics Plants, Medicinal Promoter Regions, Genetic Sequence Homology, Nucleic Acid
Chemicals
DNA Transposable Elements Plant Proteins Plant Proteins, Dietary legumin protein, plant DNA Restriction Enzymes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Lycett G W
Croy R R
Shirsat A H
Richards D M
Boulter D
References (24)
24 references, click to expand
  1. The complete nucleotide sequence of a legumin gene from pea (Pisum sativum L.).
    Nucleic Acids Res. 1984 Jun 11;12(11):4493-506 PMID: 6330672
  2. cA lectin gene insertion has the structural features of a transposable element.
    Cell. 1983 Oct;34(3):1023-31 PMID: 6313203
  3. Molecular interactions between the components of the En-I transposable element system of Zea mays.
    EMBO J. 1985 Mar;4(3):579-83 PMID: 15926216
  4. Molecular drive: a cohesive mode of species evolution.
    Nature. 1982 Sep 9;299(5879):111-7 PMID: 7110332
  5. A bacteriophage lambda vector for cloning large DNA fragments made with several restriction enzymes.
    Gene. 1980 Aug;10(3):249-59 PMID: 6254843
  6. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  7. EK2 derivatives of bacteriophage lambda useful in the cloning of DNA from higher organisms: the lambdagtWES system.
    Science. 1977 Apr 8;196(4286):175-7 PMID: 322278
  8. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  9. A rapid enzymatic DNA sequencing technique: determination of sequence alterations in early simian virus 40 temperature sensitive and deletion mutants.
    Nucleic Acids Res. 1980 May 24;8(10):2225-40 PMID: 6253881
  10. The 17-kb Tam1 element of Antirrhinum majus induces a 3-bp duplication upon integration into the chalcone synthase gene.
    EMBO J. 1984 May;3(5):1015-9 PMID: 16453519
  11. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  12. Tissue-specific and light-regulated expression of a pea nuclear gene encoding the small subunit of ribulose-1,5-bisphosphate carboxylase.
    EMBO J. 1984 Aug;3(8):1671-9 PMID: 6479146
  13. Measurement of gene number for seed storage proteins in Pisum.
    Nucleic Acids Res. 1985 Feb 11;13(3):687-99 PMID: 2987806
  14. An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.
    Nucleic Acids Res. 1982 May 11;10(9):2951-61 PMID: 7099970
  15. Magic enhancers?
    DNA. 1984;3(1):1-5 PMID: 6321119
  16. The isolation of high molecular weight DNA from whole organisms or large tissue masses.
    Anal Biochem. 1978 Apr;85(2):609-13 PMID: 565603
  17. Multiple point mutations affecting the simian virus 40 enhancer.
    Science. 1983 Feb 11;219(4585):626-31 PMID: 6297005
  18. Alternative secondary structures of leader RNAs and the regulation of the trp, phe, his, thr, and leu operons.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6186-90 PMID: 392514
  19. Control of storage-protein synthesis during seed development in pea (Pisum sativum L.).
    Biochem J. 1982 Oct 15;208(1):119-27 PMID: 6897609
  20. Attenuation in the control of SV40 gene expression.
    Cell. 1982 May;29(1):183-93 PMID: 6286139
  21. Influence of Sulfur Nutrition on Developmental Patterns of Some Major Pea Seed Proteins and Their mRNAs.
    Plant Physiol. 1984 Jul;75(3):651-7 PMID: 16663681
  22. Regulation of Legumin Levels in Developing Pea Seeds under Conditions of Sulfur Deficiency: Rates of Legumin Synthesis and Levels of Legumin mRNA.
    Plant Physiol. 1983 Jan;71(1):47-54 PMID: 16662796
  23. A functional map of the nopaline synthase promoter.
    Nucleic Acids Res. 1984 Oct 25;12(20):7831-46 PMID: 6493982
  24. Left-handed DNA helices.
    Nature. 1980 Feb 21;283(5749):743-5 PMID: 7354864
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1985-09-25
Pages
6733-43
Language
English
Region
England
NLM ID
0411011
PMCID
PMC321989
Subset
IM
Databases
GENBANK
X02983, X02984
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]