Home LiteratureArticle Details
PMID: 3024114 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The DNA replication origins of herpes simplex virus type 1 strain Angelotti.

Nucleic acids research ·Vol. 14 ·No. 21 ·1986-11-11 ·Pages 8655-67

Knopf CW, Spies B, Kaerner HC

Abstract

The nucleotide sequences of the origins of DNA replication (ori) of the S- and L-component (oriS, oriL) of the herpes simplex virus type 1 (HSV-1) standard genome were determined from HSV-1 strain Angelotti (ANG). In contrast to other HSV-1 strains, the ANG oriS sequence revealed an insertion of an TA-dinucleotide in an otherwise very conserved but imperfect palindromic sequence of 47 bp. The oriL sequence of the standard ANG genome was found to be identical to that of an ANG class II defective genome which exhibits a duplication of a 144 bp palindrome. A model is presented to explain the origination of the amplified ANG oriL sequences from the parental genome with a single copy of oriL via illegitimate recombination. Alignment of the ori sequences of HSV, adeno- and papovaviruses unveiled that the HSV ori region can be subdivided into two distinct sites of homology to the DNA initiation signals of papova- and adenoviruses, suggesting that the HSV origins of replication comprise elements for DNA replication by both, cellular and virus-encoded DNA polymerases.

MeSH Terms
Animals Base Sequence Cell Line Chlorocebus aethiops Cloning, Molecular DNA Replication Genes, Viral Kidney Nucleic Acid Conformation Simplexvirus/genetics
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Knopf C W
Spies B
Kaerner H C
References (48)
48 references, click to expand
  1. Properties of a supercoiled deoxyribonucleic acid-protein relaxation complex and strand specificity of the relaxation event.
    Biochemistry. 1970 Oct 27;9(22):4428-40 PMID: 4919547
  2. Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells.
    Cell. 1980 Oct;21(3):773-83 PMID: 6254668
  3. On the mechanism of production of tandem genetic duplications in phage lambda.
    J Mol Biol. 1975 Jun 15;95(1):83-9 PMID: 1097713
  4. Amplification of a specific region of the polyoma virus genome.
    Nature. 1975 Jul 17;256(5514):175-9 PMID: 168496
  5. Specific reiteration of viral DNA sequences in mammalian cells.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 1:129-36 PMID: 169051
  6. An unusual defective genotype derived from herpes simplex virus strain ANG.
    Intervirology. 1975-1976;6(4-5):270-84 PMID: 186436
  7. Replication of herpes simplex virus DNA: localization of replication recognition signals within defective virus genomes.
    Proc Natl Acad Sci U S A. 1981 Feb;78(2):742-6 PMID: 6262768
  8. Recombination between short DNA homologies causes tandem duplication.
    Nature. 1981 Jul 16;292(5820):269-71 PMID: 7019717
  9. Amplification of a short nucleotide sequence in the repeat units of defective herpes simplex virus type 1 Angelotti DNA.
    J Virol. 1981 Jul;39(1):75-81 PMID: 6268822
  10. Site-specific inversion sequence of the herpes simplex virus genome: domain and structural features.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):7047-51 PMID: 6273905
  11. Initiation of SV40 DNA replication in vivo: location and structure of 5' ends of DNA synthesized in the ori region.
    Cell. 1982 Apr;28(4):767-79 PMID: 6178514
  12. Illegitimate recombination mediated in vitro by DNA gyrase of Escherichia coli: structure of recombinant DNA molecules.
    Proc Natl Acad Sci U S A. 1982 Jun;79(12):3724-8 PMID: 6285361
  13. Eukaryotic DNA replication: viral and plasmid model systems.
    Annu Rev Biochem. 1982;51:901-34 PMID: 7051968
  14. The herpes simplex virus amplicon: a new eucaryotic defective-virus cloning-amplifying vector.
    Cell. 1982 Aug;30(1):295-304 PMID: 6290080
  15. DNA sequence analysis of an immediate-early gene region of the herpes simplex virus type 1 genome (map coordinates 0.950 to 0.978).
    J Gen Virol. 1982 Sep;62 (Pt 1):1-15 PMID: 6290591
  16. Adenovirus DNA replication in vitro: identification of a host factor that stimulates synthesis of the preterminal protein-dCMP complex.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6438-42 PMID: 6216480
  17. Role of short regions of homology in intermolecular illegitimate recombination events.
    Proc Natl Acad Sci U S A. 1983 May;80(9):2452-6 PMID: 6302684
  18. Adenovirus DNA replication in vitro: synthesis of full-length DNA with purified proteins.
    Proc Natl Acad Sci U S A. 1983 Jul;80(14):4266-70 PMID: 6308611
  19. A DNA topoisomerase activity copurifies with the DNA polymerase induced by herpes simplex virus.
    Biochim Biophys Acta. 1983 Sep 9;740(4):379-89 PMID: 6309234
  20. An improved strategy for rapid direct sequencing of both strands of long DNA molecules cloned in a plasmid.
    Nucleic Acids Res. 1983 Aug 25;11(16):5521-40 PMID: 6310503
  21. Class I defective herpes simplex virus DNA as a molecular cloning vehicle in eucaryotic cells.
    J Virol. 1983 Nov;48(2):384-95 PMID: 6312096
  22. Specific binding of a cellular DNA replication protein to the origin of replication of adenovirus DNA.
    Proc Natl Acad Sci U S A. 1983 Oct;80(20):6177-81 PMID: 6336326
  23. Herpes simplex virus defective genomes: structure of HSV-1 ANG defective DNA of class II and encoded polypeptides.
    J Gen Virol. 1983 Nov;64 (Pt 11):2455-70 PMID: 6315866
  24. Characterization of the TRS/IRS origin of DNA replication of herpes simplex virus type 1.
    Virology. 1983 Oct 30;130(2):427-38 PMID: 6316638
  25. Replication origins and a sequence involved in coordinate induction of the immediate-early gene family are conserved in an intergenic region of herpes simplex virus.
    Nucleic Acids Res. 1984 Feb 24;12(4):2061-79 PMID: 6322134
  26. Structure and function of the adenovirus origin of replication.
    Cell. 1984 May;37(1):309-19 PMID: 6722875
  27. Sequence specificity for the initiation of RNA-primed simian virus 40 DNA synthesis in vivo.
    J Mol Biol. 1984 May 15;175(2):131-57 PMID: 6202875
  28. Localization of an origin of DNA replication within the TRS/IRS repeated region of the herpes simplex virus type 1 genome.
    EMBO J. 1982;1(7):863-7 PMID: 6329712
  29. Simian virus 40 DNA replication in vitro.
    Proc Natl Acad Sci U S A. 1984 Nov;81(22):6973-7 PMID: 6095264
  30. Sequence of the putative origin of replication in the UL region of herpes simplex virus type 1 ANG DNA.
    J Gen Virol. 1984 Dec;65 ( Pt 12):2109-19 PMID: 6096489
  31. A noninverting genome of a viable herpes simplex virus 1: presence of head-to-tail linkages in packaged genomes and requirements for circularization after infection.
    J Virol. 1985 Feb;53(2):587-95 PMID: 2982037
  32. Sequence determination and genetic content of the short unique region in the genome of herpes simplex virus type 1.
    J Mol Biol. 1985 Jan 5;181(1):1-13 PMID: 2984429
  33. Topoisomerase II is a structural component of mitotic chromosome scaffolds.
    J Cell Biol. 1985 May;100(5):1706-15 PMID: 2985625
  34. Cloning, sequencing, and functional analysis of oriL, a herpes simplex virus type 1 origin of DNA synthesis.
    Mol Cell Biol. 1985 May;5(5):930-42 PMID: 2987682
  35. Isomerization of herpes simplex virus 1 genome: identification of the cis-acting and recombination sites within the domain of the a sequence.
    Cell. 1985 Jul;41(3):803-11 PMID: 2988789
  36. Recognition site of nuclear factor I, a sequence-specific DNA-binding protein from HeLa cells that stimulates adenovirus DNA replication.
    EMBO J. 1985 Jun;4(6):1515-21 PMID: 4040852
  37. DNA sequence of the region in the genome of herpes simplex virus type 1 containing the genes for DNA polymerase and the major DNA binding protein.
    Nucleic Acids Res. 1985 Nov 25;13(22):8143-63 PMID: 2999714
  38. Complete DNA sequence of the short repeat region in the genome of herpes simplex virus type 1.
    Nucleic Acids Res. 1986 Feb 25;14(4):1727-45 PMID: 3005980
  39. DNA binding site for a factor(s) required to initiate simian virus 40 DNA replication.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1646-50 PMID: 3006062
  40. Cloning and characterization of oriL2, a large palindromic DNA replication origin of herpes simplex virus type 2.
    J Virol. 1986 May;58(2):513-21 PMID: 3009865
  41. Generation of an inverting herpes simplex virus 1 mutant lacking the L-S junction a sequences, an origin of DNA synthesis, and several genes including those specifying glycoprotein E and the alpha 47 gene.
    J Virol. 1986 May;58(2):583-91 PMID: 3009870
  42. Identification of a varicella-zoster virus origin of DNA replication and its activation by herpes simplex virus type 1 gene products.
    J Gen Virol. 1986 Aug;67 ( Pt 8):1613-23 PMID: 3016156
  43. Metaphase chromosome structure. Involvement of topoisomerase II.
    J Mol Biol. 1986 Apr 20;188(4):613-29 PMID: 3016287
  44. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  45. The binding site on SV40 DNA for a T antigen-related protein.
    Cell. 1978 Jan;13(1):165-79 PMID: 202398
  46. Adenovirus DNA replication in vitro.
    Proc Natl Acad Sci U S A. 1979 Feb;76(2):655-9 PMID: 284391
  47. Trans-complementable copy-number mutants of plasmid ColE1.
    Nature. 1980 Jan 10;283(5743):216-8 PMID: 7350544
  48. Evolutionary variants of simian virus 40: cloned substituted variants containing multiple initiation sites for DNA replication.
    Virology. 1975 Jul;66(1):53-69 PMID: 166505
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1986-11-11
Pages
8655-67
Language
English
Region
England
NLM ID
0411011
PMCID
PMC311884
Subset
IM
Databases
GENBANK
X04589, X04597
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]