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PMID: 3029692 Published · ppublish English Journal Article

DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.

Nucleic acids research ·Vol. 15 ·No. 2 ·1987-01-26 ·Pages 771-84

Adachi T, Mizuuchi M, Robinson EA, Appella E, O'Dea MH, Gellert M, Mizuuchi K

Abstract

We have determined the sequence of the E. coli gyrB gene, using a new sequencing approach in which transposition from a mini-Mu plasmid into the DNA provides random start points for dideoxynucleotide sequence analysis. The gyrB sequence corresponds to a protein 804 amino acids long; a previously isolated protein fragment with partial enzymatic activity has been identified as the C-terminal half-molecule. A plausible terminator of gyrB transcription is located just beyond the structural gene.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/genetics Base Sequence Cloning, Molecular DNA Restriction Enzymes Escherichia coli/genetics Genes Genes, Bacterial Plasmids
Chemicals
Bacterial Proteins DNA Restriction Enzymes
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Adachi T
Mizuuchi M
Robinson E A
Appella E
O'Dea M H
Gellert M
Mizuuchi K
References (32)
32 references, click to expand
  1. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4767-71 PMID: 200930
  2. Mechanism of bacteriophage mu transposition.
    Annu Rev Genet. 1986;20:385-429 PMID: 3028246
  3. Purification of subunits of Escherichia coli DNA gyrase and reconstitution of enzymatic activity.
    Proc Natl Acad Sci U S A. 1978 Apr;75(4):1773-7 PMID: 347446
  4. DNA gyrase: subunit structure and ATPase activity of the purified enzyme.
    Proc Natl Acad Sci U S A. 1978 Dec;75(12):5960-3 PMID: 153529
  5. Characterization of the dnaA, gyrB and other genes in the dnaA region of the Escherichia coli chromosome on specialized transducing phages lambda tna.
    Mol Gen Genet. 1979 Sep;175(2):135-44 PMID: 160000
  6. A topoisomerase from Escherichia coli related to DNA gyrase.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6110-4 PMID: 230498
  7. DNA gyrase: purification and catalytic properties of a fragment of gyrase B protein.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6289-93 PMID: 230505
  8. DNA gyrase and the supercoiling of DNA.
    Science. 1980 Feb 29;207(4434):953-60 PMID: 6243420
  9. Linkage map of Escherichia coli K-12, edition 6.
    Microbiol Rev. 1980 Mar;44(1):1-56 PMID: 6997720
  10. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  11. Protein degradation in E. coli: the lon mutation and bacteriophage lambda N and cII protein stability.
    Cell. 1981 Apr;24(1):225-33 PMID: 6453650
  12. DNA topoisomerases.
    Annu Rev Biochem. 1981;50:879-910 PMID: 6267993
  13. Analysis of transcription of the human Alu family ubiquitous repeating element by eukaryotic RNA polymerase III.
    Nucleic Acids Res. 1981 Dec 11;9(23):6439-56 PMID: 6275362
  14. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.
    Nucleic Acids Res. 1982 Aug 11;10(15):4731-51 PMID: 7133997
  15. Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents.
    Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:1087-97 PMID: 6345068
  16. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  17. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  18. Kilo-sequencing: creation of an ordered nest of asymmetric deletions across a large target sequence carried on phage M13.
    Methods Enzymol. 1983;101:98-122 PMID: 6310345
  19. In vitro transposition of bacteriophage Mu: a biochemical approach to a novel replication reaction.
    Cell. 1983 Dec;35(3 Pt 2):785-94 PMID: 6317201
  20. Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):789-800 PMID: 6364042
  21. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  22. Cell-division control in Escherichia coli: specific induction of the SOS function SfiA protein is sufficient to block septation.
    Proc Natl Acad Sci U S A. 1984 Jul;81(14):4490-4 PMID: 6087326
  23. DNA sequence and transcription of the region upstream of the E. coli gyrB gene.
    Nucleic Acids Res. 1984 Aug 24;12(16):6389-95 PMID: 6089112
  24. Site-specific recognition of the bacteriophage Mu ends by the Mu A protein.
    Cell. 1984 Dec;39(2 Pt 1):387-94 PMID: 6094016
  25. Mechanism of transposition of bacteriophage Mu: polarity of the strand transfer reaction at the initiation of transposition.
    Cell. 1984 Dec;39(2 Pt 1):395-404 PMID: 6094017
  26. The DNA dependence of the ATPase activity of DNA gyrase.
    J Biol Chem. 1984 Dec 10;259(23):14472-80 PMID: 6094559
  27. Cloning of the A gene of bacteriophage Mu and purification of its product, the Mu transposase.
    J Biol Chem. 1985 Feb 10;260(3):1832-5 PMID: 2981873
  28. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  29. The extent of DNA sequence required for a functional bacterial attachment site of phage lambda.
    Nucleic Acids Res. 1985 Feb 25;13(4):1193-208 PMID: 3158879
  30. Physical mapping and nucleotide sequence of the rnpA gene that encodes the protein component of ribonuclease P in Escherichia coli.
    Gene. 1985;38(1-3):85-93 PMID: 2415431
  31. Nalidixic acid-resistant mutations of the gyrB gene of Escherichia coli.
    Mol Gen Genet. 1986 Sep;204(3):367-73 PMID: 3020376
  32. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1987-01-26
Pages
771-84
Language
English
Region
England
NLM ID
0411011
PMCID
PMC340466
Subset
IM
Databases
GENBANK
X00870, X04341
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