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PMID: 372738 Published · ppublish English Journal Article

Plasmid replication functions. III. Origin and direction of replication of a "mini" plasmid derived from R6-5.

Molecular & general genetics : MGG ·Vol. 168 ·No. 1 ·1979-01-05 ·Pages 27-36

Synenki RM, Nordheim A, Timmis KN

Abstract

Replicating DNA molecules of the mini R6-5 plasmid, pKTO71, were purified by equilibrium centrifugation in two successive ethidium bromide-caesium chloride gradients, converted to linear forms by cleavage with either HindIII or BglII restriction endonuclease, and examined in the electron microscope. Determination of the replication fork positions in 65 replicating molecules demonstrated that replication is initiated at a unique location on the plasmid and that it proceeds uni-directionally from this site. The direction of replication is such that the origin-proximal BglII cleavage site is replicated late or, in the case of the parent R6-5 plasmid, is such that the R-determinant region of the molecule is replicated early. The origin of replication, located by these experiments at R6-5 coordinate 98.6 kb, is clearly distinct from that of the R6-5 incompatibility determinant which has been shown to be located on an adjacent PstI-generated DNA fragment whose termini have R6-5 coordinates 96.8 and 97.9 kb. This result indicates that the incompatibility function is not an origin DNA sequence.

MeSH Terms
DNA Replication DNA Restriction Enzymes/metabolism DNA, Bacterial/genetics Escherichia coli/genetics Microscopy, Electron Nucleic Acid Conformation R Factors
Chemicals
DNA, Bacterial DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Synenki R M
Nordheim A
Timmis K N
References (36)
36 references, click to expand
  1. Construction of biologically functional bacterial plasmids in vitro.
    Proc Natl Acad Sci U S A. 1973 Nov;70(11):3240-4 PMID: 4594039
  2. Unidirectional replication of plasmid ColE1 DNA.
    Nature. 1974 Sep 27;251(5473):337-40 PMID: 4610399
  3. Plasmid replication functions. II. Cloning analysis of the repA replication region of antibiotic resistance plasmid R6-5.
    Mol Gen Genet. 1979 Jan 5;168(1):1-25 PMID: 372736
  4. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.
    Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159-66 PMID: 4894690
  5. The bacterial chromosome and its manner of replication as seen by autoradiography.
    J Mol Biol. 1963 Mar;6:208-13 PMID: 14017761
  6. Replication of the F'lac sex factor in the cell cycle of Escherichia coli.
    Mol Gen Genet. 1971;111(3):242-55 PMID: 4935354
  7. Two origins of replication in composite R plasmid DNA.
    Nature. 1976 Jan 29;259(5541):281-4 PMID: 1250362
  8. Cloning, isolation, and characterization of replication regions of complex plasmid genomes.
    Proc Natl Acad Sci U S A. 1975 Jun;72(6):2242-6 PMID: 1094460
  9. Replication of colicin E1 plasmid DNA in cell extracts. Origin and direction of replication.
    Proc Natl Acad Sci U S A. 1974 Jun;71(6):2260-4 PMID: 4601821
  10. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA.
    Proc Natl Acad Sci U S A. 1972 Aug;69(8):2110-4 PMID: 4559594
  11. Circular DNA forms of colicinogenic factors E1, E2 and E3 from Escherichia coli.
    J Mol Biol. 1968 Sep 14;36(2):185-94 PMID: 4939624
  12. Purification and characterization of covalently closed replicative intermediates of ColEl DNA from Escherichia coli.
    Biochemistry. 1977 Apr 19;16(8):1677-83 PMID: 322703
  13. Unidirectional replication in Escherichia coli of three small plasmids derived from R factor R12.
    Plasmid. 1977 Nov;1(1):8-18 PMID: 375272
  14. Structure of replicating simian virus 40 deoxyribonucleic acid molecules.
    J Virol. 1971 Oct;8(4):478-90 PMID: 4331651
  15. Unidirectional replication of the P-group plasmid RK2.
    Biochim Biophys Acta. 1977 Sep 6;478(1):109-13 PMID: 329885
  16. Cloning and characterization of EcoRI and HindIII restriction endonuclease-generated fragments of antibiotic resistance plasmids R6-5 and R6.
    Mol Gen Genet. 1978 Jun 14;162(2):121-37 PMID: 672900
  17. A dye-buoyant-density method for the detection and isolation of closed circular duplex DNA: the closed circular DNA in HeLa cells.
    Proc Natl Acad Sci U S A. 1967 May;57(5):1514-21 PMID: 5231757
  18. Method for the isolation of the replication region of a bacterial replicon: construction of a mini-F'kn plasmid.
    J Bacteriol. 1976 Aug;127(2):982-7 PMID: 783124
  19. Relationship of Flac replication and chromosome replication.
    Proc Natl Acad Sci U S A. 1972 Sep;69(9):2706-10 PMID: 4560697
  20. Control of F'lac replication in Escherichia coli B-r.
    J Bacteriol. 1973 Apr;114(1):294-9 PMID: 4572715
  21. Replication control in a composite plasmid constructed by in vitro linkage of two distinct replicons.
    Nature. 1976 Jan 29;259(5541):285-90 PMID: 765836
  22. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  23. Random replication of the stringent plasmid R1 in Escherichia coli K-12.
    J Bacteriol. 1975 Aug;123(2):443-8 PMID: 1097410
  24. Covalently closed circular DNA molecules of low superhelix density as intermediate forms in plasmid replication.
    Nature. 1976 Jun 10;261(5560):512-6 PMID: 778630
  25. Replication region fragments cloned from Flac+ are identical to EcoRI fragment f5 of F.
    J Bacteriol. 1976 Sep;127(3):1571-5 PMID: 956131
  26. Pedigrees of some mutant strains of Escherichia coli K-12.
    Bacteriol Rev. 1972 Dec;36(4):525-57 PMID: 4568763
  27. A catenated DNA molecule as an intermediate in the replication of the resistance transfer factor R6K in Escherichia coli.
    Biochem Biophys Res Commun. 1973 Oct 15;54(4):1451-9 PMID: 4585292
  28. Bidirectional replication of plasmid R6K DNA in Escherichia coli; correspondence between origin of replication and position of single-strand break in relaxed complex.
    Proc Natl Acad Sci U S A. 1975 Aug;72(8):2905-9 PMID: 1103126
  29. Bidirection replication from a unique origin in a mini-F plasmid.
    Proc Natl Acad Sci U S A. 1977 Mar;74(3):1138-41 PMID: 322144
  30. Characterization of a mini-ColC1 plasmid.
    J Bacteriol. 1976 Apr;126(1):447-53 PMID: 770430
  31. Plasmid incompatibility: cloning analysis of an incFII determinant of R6-5.
    Nature. 1978 May 4;273(5657):27-32 PMID: 692666
  32. Replication of a bacterial episome under relaxed control.
    J Mol Biol. 1969 Sep 28;44(3):387-402 PMID: 5346048
  33. Replication of colicin E1 plasmid DNA in minicells from a unique replication initiation site.
    Proc Natl Acad Sci U S A. 1974 Jun;71(6):2256-9 PMID: 4601583
  34. Origin and direction of replication of the drug resistance plasmid R100.1 and of a resistance transfer factor derivative in synchronized cultures.
    J Bacteriol. 1977 Sep;131(3):929-42 PMID: 330504
  35. Mode of replication of the conjugative R-plasmid RSF1040 in Escherichia coli.
    J Bacteriol. 1976 Apr;126(1):454-66 PMID: 770431
  36. Characterization of the replicative intermediates of polyoma virus.
    Virology. 1974 Jan;57(1):147-60 PMID: 4131952
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1979-01-05
Pages
27-36
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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