Home LiteratureArticle Details
PMID: 3737413 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The common 5' terminal sequence on trypanosome mRNAs: a target for anti-messenger oligodeoxynucleotides.

Nucleic acids research ·Vol. 14 ·No. 14 ·1986-07-25 ·Pages 5605-14

Cornelissen AW, Verspieren MP, Toulmé JJ, Swinkels BW, Borst P

Abstract

Several mature mRNAs of Trypanosoma brucei were previously shown to have a common 5' terminal sequence of 35 nucleotides (nt) encoded by a separate mini-exon. To verify whether all trypanosome mRNAs contain this mini-exon sequence at their 5' end, we have tested oligodeoxynucleotides complementary to different parts of the 35 nt leader sequence for their ability to inhibit translation of total trypanosome mRNA. All oligomers tested inhibited translation of trypanosome mRNAs in a wheat germ extract. They had no effect on translation of Brome mosaic virus mRNA and of a trypanosome mRNA for phosphoglycerate kinase modified to remove the mini-exon sequence. Three different 12mers inhibited translation 35-60%; both the 22- and 34mer inhibited translation 95-100%. Incorporation of amino acids decreased proportionally in all protein bands detected in high resolution polyacrylamide gels. Our results show that all trypanosome mRNAs that yield a product detectable in gel contain a mini-exon sequence. We infer that most, if not all, trypanosome mRNAs contain a 5' terminal mini-exon sequence acquired by discontinuous synthesis.

MeSH Terms
Animals Base Sequence Genes Kinetics Oligodeoxyribonucleotides Phosphoglycerate Kinase/genetics Plants/metabolism Plasmids Protein Biosynthesis RNA, Messenger/genetics Transcription, Genetic Triticum/metabolism Trypanosoma brucei brucei/enzymology,genetics
Chemicals
Oligodeoxyribonucleotides RNA, Messenger Phosphoglycerate Kinase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Cornelissen A W
Verspieren M P
Toulmé J J
Swinkels B W
Borst P
References (55)
55 references, click to expand
  1. Localization of variable antigens in the surface coat of Trypanosoma brucei using ferritin conjugated antibody.
    Nature. 1969 Dec 13;224(5224):1125-6 PMID: 5353729
  2. The role of antisense RNA in gene regulation.
    Annu Rev Biochem. 1986;55:569-97 PMID: 2427015
  3. Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotide.
    Proc Natl Acad Sci U S A. 1978 Jan;75(1):280-4 PMID: 75545
  4. Antigenic variation in trypanosomes.
    Nature. 1978 Jun 22;273(5664):613-7 PMID: 661969
  5. The isolation of plasmids containing DNA complementary to messenger RNA for variant surface glycoproteins of Trypanosoma brucei.
    Gene. 1980 Mar;8(4):391-417 PMID: 7364218
  6. Biosynthesis and cell surface localization of nonglycosylated human histocompatibility antigens.
    J Immunol. 1981 Jan;126(1):270-5 PMID: 7005335
  7. DNA rearrangements involving the genes for variant antigens in Trypanosoma brucei.
    Cold Spring Harb Symp Quant Biol. 1981;45 Pt 2:935-43 PMID: 6942953
  8. RNA splicing is required to make the messenger RNA for a variant surface antigen in trypanosomes.
    Nucleic Acids Res. 1982 Jun 25;10(12):3591-604 PMID: 6287414
  9. Molecular basis for trypanosome antigenic variation.
    Cell. 1982 Jun;29(2):291-303 PMID: 6811137
  10. Human beta-globin pre-mRNA synthesized in vitro is accurately spliced in Xenopus oocyte nuclei.
    Cell. 1983 Mar;32(3):681-94 PMID: 6550524
  11. Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end.
    Gene. 1982 Dec;20(2):281-9 PMID: 7166234
  12. pEMBL: a new family of single stranded plasmids.
    Nucleic Acids Res. 1983 Mar 25;11(6):1645-55 PMID: 6300771
  13. The transposition unit of variant surface glycoprotein gene 118 of Trypanosoma brucei. Presence of repeated elements at its border and absence of promoter-associated sequences.
    J Mol Biol. 1983 Jun 15;167(1):57-75 PMID: 6306255
  14. Translational control of IS10 transposition.
    Cell. 1983 Sep;34(2):683-91 PMID: 6311438
  15. Tandem repetition of the 5' mini-exon of variant surface glycoprotein genes: a multiple promoter for VSG gene transcription?
    Cell. 1983 Oct;34(3):891-900 PMID: 6313212
  16. Sequences homologous to the variant antigen mRNA spliced leader are located in tandem repeats and variable orphons in trypanosoma brucei.
    Cell. 1983 Oct;34(3):901-9 PMID: 6313213
  17. Cell-free translation of messenger RNA in a wheat germ system.
    Methods Enzymol. 1983;96:38-50 PMID: 6656637
  18. [New substances with high specific activity for nucleic acid sequences: oligodeoxynucleotides covalently linked to an intercalating agent].
    C R Seances Acad Sci III. 1983;297(7):369-72 PMID: 6420010
  19. A method for isolation of intact, translationally active ribonucleic acid.
    DNA. 1983;2(4):329-35 PMID: 6198133
  20. Inhibition of thymidine kinase gene expression by anti-sense RNA: a molecular approach to genetic analysis.
    Cell. 1984 Apr;36(4):1007-15 PMID: 6323013
  21. The use of RNAs complementary to specific mRNAs to regulate the expression of individual bacterial genes.
    Cell. 1984 Jun;37(2):429-36 PMID: 6202422
  22. Many trypanosome messenger RNAs share a common 5' terminal sequence.
    Nucleic Acids Res. 1984 May 11;12(9):3777-90 PMID: 6547230
  23. Apparent discontinuous transcription of Trypanosoma brucei variant surface antigen genes.
    Nature. 1984 Sep 27-Oct 3;311(5984):350-5 PMID: 6090933
  24. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.
    Nucleic Acids Res. 1984 Sep 25;12(18):7035-56 PMID: 6091052
  25. Identification of a small RNA containing the trypanosome spliced leader: a donor of shared 5' sequences of trypanosomatid mRNAs?
    Cell. 1984 Oct;38(3):721-9 PMID: 6091897
  26. Discontinuous synthesis of mRNA in trypanosomes.
    EMBO J. 1984 Oct;3(10):2387-92 PMID: 6094183
  27. Polymer supported DNA synthesis using hydroxybenzotriazole activated phosphotriester intermediates.
    Nucleic Acids Res. 1984 Nov 26;12(22):8639-51 PMID: 6095205
  28. Anti-mRNA: specific inhibition of translation of single mRNA molecules.
    Proc Natl Acad Sci U S A. 1984 Dec;81(23):7525-8 PMID: 6438637
  29. [Nonsense RNA: a tool for specifically inhibiting the expression of a gene in vivo].
    C R Acad Sci III. 1984;299(8):271-4 PMID: 6210135
  30. Antigenic variation of trypanosomes.
    Biochim Biophys Acta. 1985 Jan 29;824(1):1-15 PMID: 2578290
  31. Injected anti-sense RNAs specifically block messenger RNA translation in vivo.
    Proc Natl Acad Sci U S A. 1985 Jan;82(1):144-8 PMID: 3855537
  32. Production of phenocopies by Krüppel antisense RNA injection into Drosophila embryos.
    Nature. 1985 Feb 21-27;313(6004):703-6 PMID: 2579337
  33. Calmodulin genes in trypanosomes are tandemly repeated and produce multiple mRNAs with a common 5' leader sequence.
    Proc Natl Acad Sci U S A. 1985 Jun;82(12):3998-4002 PMID: 3858856
  34. Molecular biology of trypanosome antigenic variation.
    Microbiol Rev. 1985 Jun;49(2):107-25 PMID: 2409439
  35. Mature mRNAs of Trypanosoma brucei possess a 5' cap acquired by discontinuous RNA synthesis.
    Nucleic Acids Res. 1985 Jun 25;13(12):4253-66 PMID: 2409534
  36. Oligonucleotides covalently linked to intercalating agents. Influence of positively charged substituents on binding to complementary sequences.
    J Biol Chem. 1985 Jul 25;260(15):8936-41 PMID: 2991226
  37. Discontinuous transcription and antigenic variation in trypanosomes.
    Annu Rev Biochem. 1986;55:701-32 PMID: 2874767
  38. Activation of trypanosome surface glycoprotein genes involves a duplication-transposition leading to an altered 3' end.
    Cell. 1981 Dec;27(3 Pt 2):497-505 PMID: 6101223
  39. Thermal regulation of beta-galactosidase synthesis using anti-sense RNA directed against the coding portion of the mRNA.
    J Biol Chem. 1985 Aug 5;260(16):9085-7 PMID: 2410407
  40. Quantitative hybridization-arrest of mRNA in Xenopus oocytes using single-stranded complementary DNA or oligonucleotide probes.
    Nucleic Acids Res. 1985 Jul 11;13(13):4991-5004 PMID: 3875079
  41. Translation of mRNA injected into Xenopus oocytes is specifically inhibited by antisense RNA.
    J Cell Biol. 1985 Sep;101(3):1094-9 PMID: 2411734
  42. Characterization of sequence-specific oligodeoxyribonucleoside methylphosphonates and their interaction with rabbit globin mRNA.
    Biochemistry. 1985 Jul 16;24(15):4041-6 PMID: 2413882
  43. Antigenic variation in African trypanosomes.
    Annu Rev Microbiol. 1985;39:475-502 PMID: 3904609
  44. Inhibition of rabbit globin mRNA translation by sequence-specific oligodeoxyribonucleotides.
    Biochemistry. 1985 Oct 22;24(22):6132-8 PMID: 4084510
  45. Hybridization arrest of globin synthesis in rabbit reticulocyte lysates and cells by oligodeoxyribonucleoside methylphosphonates.
    Biochemistry. 1985 Oct 22;24(22):6139-45 PMID: 4084511
  46. Control of ribonucleic acid function by oligonucleoside methylphosphonates.
    Biochimie. 1985 Jul-Aug;67(7-8):769-76 PMID: 3002493
  47. Oligodeoxynucleotides covalently linked to intercalating agents: a new class of gene regulatory substances.
    Biochimie. 1985 Jul-Aug;67(7-8):777-83 PMID: 3910111
  48. Gene conversion in trypanosome antigenic variation.
    Prog Nucleic Acid Res Mol Biol. 1985;32:1-26 PMID: 3911274
  49. Translation arrest by oligodeoxynucleotides complementary to mRNA coding sequences yields polypeptides of predetermined length.
    Nucleic Acids Res. 1986 Feb 11;14(3):1427-48 PMID: 3633502
  50. Specific inhibition of mRNA translation by complementary oligonucleotides covalently linked to intercalating agents.
    Proc Natl Acad Sci U S A. 1986 Mar;83(5):1227-31 PMID: 3513172
  51. The molecular biology of antigenic variation in trypanosomes: gene rearrangements and discontinuous transcription.
    Int Rev Cytol. 1986;99:85-117 PMID: 3007387
  52. Characterization of the gene for the microbody (glycosomal) triosephosphate isomerase of Trypanosoma brucei.
    EMBO J. 1986 Jun;5(6):1291-8 PMID: 3015595
  53. Tubulin mRNAs of Trypanosoma brucei.
    J Mol Biol. 1986 Apr 5;188(3):393-402 PMID: 3735427
  54. The spliced leader sequence of Trypanosoma brucei has a potential role as a cap donor structure.
    Mol Cell Biol. 1985 Sep;5(9):2487-90 PMID: 3837191
  55. Identification, purification and properties of clone-specific glycoprotein antigens constituting the surface coat of Trypanosoma brucei.
    Parasitology. 1975 Dec;71(3):393-417 PMID: 645
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1986-07-25
Pages
5605-14
Language
English
Region
England
NLM ID
0411011
PMCID
PMC311579
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]