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PMID: 3887397 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Active site of triosephosphate isomerase: in vitro mutagenesis and characterization of an altered enzyme.

Straus D, Raines R, Kawashima E, Knowles JR, Gilbert W

Abstract

We have replaced the glutamic acid-165 at the active site of chicken triosephosphate isomerase with an aspartic acid residue using site-directed mutagenesis. Expression of the mutant protein in a strain of Escherichia coli that lacks the bacterial isomerase results in a complementation phenotype that is intermediate between strains that have no isomerase and strains that produce either the wild-type chicken enzyme or the native E. coli isomerase. The value of kcat for the purified mutant enzyme when glyceraldehyde 3-phosphate is the substrate is 1/1500th that of the wild-type enzyme, and the Km is decreased by a factor of 3.6. With dihydroxyacetone phosphate as substrate, the kcat value is 1/240th that of the wild-type enzyme, and Km is 2 times higher. The value of Ki for a competitive inhibitor, phosphoglycolate, is the same for the mutant and wild-type enzymes, at 2 X 10(-5) M. By treating the enzyme-catalyzed isomerization as a simple three step process and assuming that substrate binding is diffusion limited, it is evident that the mutation of glutamic acid-165 to aspartic acid principally affects the free energy of the transition state(s) for the catalytic reaction itself.

MeSH Terms
Animals Binding Sites Carbohydrate Epimerases/metabolism Chickens Escherichia coli/genetics Kinetics Mutation Thermodynamics Triose-Phosphate Isomerase/genetics,metabolism
Chemicals
Carbohydrate Epimerases Triose-Phosphate Isomerase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Straus D
Raines R
Kawashima E
Knowles J R
Gilbert W
References (36)
36 references, click to expand
  1. The active chemical state of D-glyceraldehyde 3-phosphate in its reactions with D-glyceraldehyde 3-phosphate dehydrogenase, aldolase and triose phosphate isomerase.
    Biochem J. 1969 Aug;114(1):19-24 PMID: 4309306
  2. Isolation and characterization of an active-site peptide from triose phosphate isomerase.
    J Am Chem Soc. 1970 Apr 8;92(7):2170-2 PMID: 5461608
  3. Uniquely labelled active site sequence in chicken muscle triose phosphate isomerase.
    Nature. 1970 Jul 11;227(5254):180-1 PMID: 5428407
  4. Identification of site in triose phosphate isomerase labelled by glycidol phosphate.
    Nature. 1970 Jul 11;227(5254):181 PMID: 5428408
  5. Haloacetol phosphates. Characterization of the active site of rabbit muscle triose phosphate isomerase.
    Biochemistry. 1971 Jan 5;10(1):146-54 PMID: 4922541
  6. Dihydroxyacetone phosphate. Its structure and reactivity with -glycerophosphate dehydrogenase, aldolase and triose phosphate isomerase and some possible metabolic implications.
    Biochem J. 1971 Apr;122(3):285-97 PMID: 4330197
  7. The active centre of rabbit muscle triose phosphate isomerase. The site that is labelled by glycidol phosphate.
    Biochem J. 1971 Jun;123(2):163-70 PMID: 4942534
  8. Specificity and kinetics of triose phosphate isomerase from chicken muscle.
    Biochem J. 1972 Sep;129(2):301-10 PMID: 4643318
  9. Maturation of the head of bacteriophage T4. I. DNA packaging events.
    J Mol Biol. 1973 Nov 15;80(4):575-99 PMID: 4204102
  10. The existence of an electrophilic component in the reaction catalysed by triose phosphate isomerase.
    Biochem J. 1974 Aug;141(2):589-92 PMID: 4375983
  11. The influence of pH on the interaction of inhibitors with triosephosphate isomerase and determination of the pKa of the active-site carboxyl group.
    Biochemistry. 1975 Dec 2;14(24):5274-9 PMID: 47
  12. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  13. Free-energy profile of the reaction catalyzed by triosephosphate isomerase.
    Biochemistry. 1976 Dec 14;15(25):5627-31 PMID: 999838
  14. Evolution of enzyme function and the development of catalytic efficiency.
    Biochemistry. 1976 Dec 14;15(25):5631-40 PMID: 999839
  15. Deletion mapping of the polA-metB region of the Escherichia coli chromosome.
    J Bacteriol. 1979 May;138(2):653-6 PMID: 35528
  16. Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells.
    Gene. 1979 May;6(1):23-8 PMID: 383576
  17. Statistical analysis of enzyme kinetic data.
    Methods Enzymol. 1979;63:103-38 PMID: 502857
  18. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  19. Direct observation of substrate distortion by triosephosphate isomerase using Fourier transform infrared spectroscopy.
    Biochemistry. 1980 Feb 5;19(3):472-7 PMID: 7356939
  20. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  21. On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase.
    Philos Trans R Soc Lond B Biol Sci. 1981 Jun 26;293(1063):159-71 PMID: 6115415
  22. Rapid and efficient cosmid cloning.
    Nucleic Acids Res. 1981 Jul 10;9(13):2989-98 PMID: 6269067
  23. Oligonucleotide directed mutagenesis of the human beta-globin gene: a general method for producing specific point mutations in cloned DNA.
    Nucleic Acids Res. 1981 Aug 11;9(15):3647-56 PMID: 7279669
  24. A rapid boiling method for the preparation of bacterial plasmids.
    Anal Biochem. 1981 Jun;114(1):193-7 PMID: 6269464
  25. Solid phase synthesis of polynucleotides. VI. Further studies on polystyrene copolymers for the solid support.
    Nucleic Acids Res. 1982 Mar 11;10(5):1755-69 PMID: 7071021
  26. Redesigning enzyme structure by site-directed mutagenesis: tyrosyl tRNA synthetase and ATP binding.
    Nature. 1982 Oct 21;299(5885):756-8 PMID: 6811955
  27. Oligonucleotide-directed mutagenesis as a general and powerful method for studies of protein function.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6409-13 PMID: 6983070
  28. Nucleotide sequence of the triose phosphate isomerase gene of Saccharomyces cerevisiae.
    J Mol Appl Genet. 1982;1(5):419-34 PMID: 6759603
  29. Directed mutagenesis of dihydrofolate reductase.
    Science. 1983 Nov 18;222(4625):782-8 PMID: 6356360
  30. Probing the catalytic mechanism of yeast triose phosphate isomerase by site-specific mutagenesis.
    Biochem Soc Trans. 1984 Apr;12(2):229-32 PMID: 6373437
  31. Site-specific mutagenesis of aspartate transcarbamoylase. Replacement of tyrosine 165 in the catalytic chain by serine reduces enzymatic activity.
    J Biol Chem. 1984 Sep 25;259(18):11180-3 PMID: 6088534
  32. The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus).
    Cell. 1984 Oct;38(3):835-40 PMID: 6488318
  33. Metabolism of methylglyoxal in microorganisms.
    Annu Rev Microbiol. 1984;38:49-68 PMID: 6093685
  34. Chicken triosephosphate isomerase complements an Escherichia coli deficiency.
    Proc Natl Acad Sci U S A. 1985 Apr;82(7):2014-8 PMID: 3885220
  35. GLYCOLYTIC CONTROL MECHANISMS. I. INHIBITION OF GLYCOLYSIS BY ACETATE AND PYRUVATE IN THE ISOLATED, PERFUSED RAT HEART.
    J Biol Chem. 1965 Jun;240:2308-21 PMID: 14304831
  36. Transition state analogues for enzyme catalysis.
    Nature. 1969 Aug 16;223(5207):704-5 PMID: 4979456
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1985-04-00
Pages
2272-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC397539
Subset
IM
Grants
NIGMS NIH HHS · GM09541-22 · United States
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