Home LiteratureArticle Details
PMID: 3973968 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Mutational mechanisms by which an inactive replication origin of bacteriophage M13 is turned on are similar to mechanisms of activation of ras proto-oncogenes.

Journal of virology ·Vol. 53 ·No. 3 ·1985-03-00 ·Pages 871-8

Kim MH, Ray DS

Abstract

M13 viral strand synthesis is initiated by nicking of the viral strand of the duplex replicative form by the M13 gene II initiator protein at a specific site within a sequence of about 40 base pairs having dyad symmetry. Efficient replication of the M13 viral strand also requires the presence of an adjacent sequence of ca. 100 base pairs. Together these sequences constitute the minimal origin for M13 viral strand synthesis. A pBR322 derivative having a 182-base-pair insert of M13 DNA contains a functional M13 viral strand origin and, when provided with M13 gene functions in trans, replicates under conditions nonpermissive for the parent plasmid. Chimeric plasmids containing deletions within the sequence flanking the viral strand origin are unable to replicate under these conditions. We isolated spontaneous mutants of M13 based on their ability to activate replication of such plasmids. The mutations found in these strains, as well as several produced by oligonucleotide-directed mutagenesis, all result in the substitution of any of at least four different amino acids for a specific glycine residue near the amino-terminal end of the initiator protein. Other studies have shown that overproduction of the wild-type initiator protein also restores replication. These alternate mechanisms are discussed in terms of their striking similarity to the mechanisms of activation of the ras proto-oncogenes which can be activated either by increased expression of the wild-type protein or by substitution of any of several amino acids for a glycine residue near the amino terminus.

MeSH Terms
Bacteriophages/genetics,growth & development Base Sequence Chromosome Deletion DNA Replication DNA, Viral/analysis Mutation Oligonucleotides Oncogenes Phenotype Plasmids Virus Replication
Chemicals
DNA, Viral Oligonucleotides
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Kim M H
Ray D S
References (49)
49 references, click to expand
  1. Filamentous bacterial viruses.
    Bacteriol Rev. 1969 Jun;33(2):172-209 PMID: 4979697
  2. Nucleotide sequence of the p21 transforming protein of Harvey murine sarcoma virus.
    Science. 1982 Sep 3;217(4563):934-6 PMID: 6287572
  3. Genetic assay for small fragments of bacteriophage phi X174 deoxyribonucleic acid.
    J Virol. 1971 Aug;8(2):181-9 PMID: 4940243
  4. Properties of the isolated gene 5 protein of bacteriophage fd.
    J Mol Biol. 1972 Jul 14;68(1):125-38 PMID: 4559110
  5. Replication of bacteriophage M13. VII. Requirement of the gene 2 protein for the accumulation of a specific RFII species.
    J Mol Biol. 1972 Dec 14;72(1):51-63 PMID: 4567400
  6. Conversion of the M13 viral single strand to the double-stranded replicative forms by purified proteins.
    J Biol Chem. 1974 Jul 10;249(13):3999-4005 PMID: 4604274
  7. Agarose slab-gel electrophoresis equipment.
    Anal Biochem. 1975 Sep;68(1):36-46 PMID: 1190452
  8. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  9. Purification of the rep protein of Escherichia coli. An ATPase which separates duplex DNA strands in advance of replication.
    J Biol Chem. 1978 May 10;253(9):3292-7 PMID: 147873
  10. Mutagenesis at a specific position in a DNA sequence.
    J Biol Chem. 1978 Sep 25;253(18):6551-60 PMID: 681366
  11. Insertion of the Tn3 transposon into the genome of the single-stranded DNA phage M13.
    Gene. 1978 Oct;4(2):109-19 PMID: 363518
  12. Cleavage site of bacteriophage fd gene II-protein in the origin of viral strand replication.
    Nature. 1979 Mar 22;278(5702):365-7 PMID: 423991
  13. Gene-V product of bacteriophage fd: structure of a DNA-unwinding protein and its complexes with DNA.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:21-8 PMID: 225099
  14. The rep protein of Escherichia coli: interaction with DNA and other proteins.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:335-43 PMID: 225105
  15. Gene-II protein of bacteriophage fd in enzymatic replication of viral duplex DNA.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:59-62 PMID: 225117
  16. Defined transversion mutations at a specific position in DNA using synthetic oligodeoxyribonucleotides as mutagens.
    Nucleic Acids Res. 1979 Jul 11;6(9):2973-85 PMID: 158749
  17. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  18. Mutational analysis of the simian virus 40 replicon: pseudorevertants of mutants with a defective replication origin.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6128-31 PMID: 230499
  19. Nucleotide sequence of the oncogene encoding the p21 transforming protein of Kirsten murine sarcoma virus.
    Science. 1982 Sep 3;217(4563):937-9 PMID: 6287573
  20. The replication of bacteriophage f1: gene V protein regulates the synthesis of gene II protein.
    Cell. 1982 Jun;29(2):329-35 PMID: 6981459
  21. Mechanism of activation of a human oncogene.
    Nature. 1982 Nov 11;300(5888):143-9 PMID: 6290897
  22. A point mutation is responsible for the acquisition of transforming properties by the T24 human bladder carcinoma oncogene.
    Nature. 1982 Nov 11;300(5888):149-52 PMID: 7133135
  23. Initiation and termination of phage f1 plus-strand synthesis.
    Proc Natl Acad Sci U S A. 1982 Dec;79(23):7122-6 PMID: 6961399
  24. Replication origin of bacteriophage f1. Two signals required for its function.
    J Mol Biol. 1982 Dec 5;162(2):335-43 PMID: 6984468
  25. Studies on transformation of Escherichia coli with plasmids.
    J Mol Biol. 1983 Jun 5;166(4):557-80 PMID: 6345791
  26. Activation of Ki-ras2 gene in human colon and lung carcinomas by two different point mutations.
    Nature. 1983 Aug 11-17;304(5926):507-13 PMID: 6308467
  27. The functional origin of bacteriophage f1 DNA replication. Its signals and domains.
    J Mol Biol. 1984 Feb 5;172(4):507-21 PMID: 6607361
  28. Increased intracellular concentration of an initiator protein markedly reduces the minimal sequence required for initiation of DNA synthesis.
    Proc Natl Acad Sci U S A. 1984 Mar;81(5):1336-40 PMID: 6324185
  29. Structure and function of the adenovirus origin of replication.
    Cell. 1984 May;37(1):309-19 PMID: 6722875
  30. Cloning vectors that yield high levels of single-stranded DNA for rapid DNA sequencing.
    Gene. 1984 Feb;27(2):183-91 PMID: 6327466
  31. Interference between M13 and oriM13 plasmids is mediated by a replication enhancer sequence near the viral strand origin.
    J Mol Biol. 1984 Aug 25;177(4):685-700 PMID: 6332917
  32. Isolation of DNA from agarose gels using DEAE-paper. Application to restriction site mapping of adenovirus type 16 DNA.
    Nucleic Acids Res. 1980 Jan 25;8(2):253-64 PMID: 6252542
  33. Replication of the plasmid pBR322 under the control of a cloned replication origin from the single-stranded DNA phage M13.
    Proc Natl Acad Sci U S A. 1980 Aug;77(8):4638-42 PMID: 6933512
  34. Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd.
    Gene. 1980 Oct;11(1-2):129-48 PMID: 6254849
  35. Structure of the filamentous bacteriophage fl. Location of the A, C, and D minor coat proteins.
    J Biol Chem. 1981 Jan 10;256(1):539-46 PMID: 7005219
  36. Solid-phase synthesis of polynucleotides. III. Synthesis of polynucleotides with defined sequences by the block coupling phosphotriester method.
    Nucleic Acids Res. 1980 Nov 25;8(22):5491-505 PMID: 7465419
  37. Analysis of avian leukosis virus DNA and RNA in bursal tumours: viral gene expression is not required for maintenance of the tumor state.
    Cell. 1981 Feb;23(2):311-22 PMID: 6258797
  38. Avian leukosis virus-induced tumors have common proviral integration sites and synthesize discrete new RNAs: oncogenesis by promoter insertion.
    Cell. 1981 Feb;23(2):323-34 PMID: 6258798
  39. Construction and characterization of new coliphage M13 cloning vectors.
    Gene. 1980 Nov;11(3-4):207-18 PMID: 6260570
  40. Analysis of two divergent rat genomic clones homologous to the transforming gene of Harvey murine sarcoma virus.
    Proc Natl Acad Sci U S A. 1981 Jun;78(6):3328-32 PMID: 6267583
  41. Oligonucleotide directed mutagenesis of the human beta-globin gene: a general method for producing specific point mutations in cloned DNA.
    Nucleic Acids Res. 1981 Aug 11;9(15):3647-56 PMID: 7279669
  42. Deletion analysis of the cloned replication origin region from bacteriophage M13.
    J Virol. 1981 Oct;40(1):197-203 PMID: 7288922
  43. Functional analysis of bacteriophage f1 intergenic region.
    Virology. 1981 Oct 30;114(2):463-73 PMID: 7292986
  44. Viable deletions of the M13 complementary strand origin.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):6784-8 PMID: 6273888
  45. Enzymatic synthesis of bacteriophage fd viral DNA.
    Nature. 1982 Apr 29;296(5860):828-32 PMID: 6978464
  46. Solid phase synthesis of polynucleotides. VI. Further studies on polystyrene copolymers for the solid support.
    Nucleic Acids Res. 1982 Mar 11;10(5):1755-69 PMID: 7071021
  47. Intermediate stages in enzymatic replication of bacteriophage fd duplex DNA.
    J Biol Chem. 1982 Jun 10;257(11):6488-93 PMID: 6122686
  48. Tumorigenic transformation of mammalian cells induced by a normal human gene homologous to the oncogene of Harvey murine sarcoma virus.
    Nature. 1982 Jun 10;297(5866):479-83 PMID: 6283358
  49. Genetic control of bacteriophage M13 DNA synthesis.
    J Mol Biol. 1968 Oct 14;37(1):181-200 PMID: 4939035
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1985-03-00
Pages
871-8
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC254721
Subset
IM
Grants
NIAID NIH HHS · AI 10752 · United States
NCI NIH HHS · CA 16042 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]