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PMID: 482127 Published · ppublish English Journal Article

Ethidium bromide binding to core particle: comparison with native chromatin.

Nucleic acids research ·Vol. 6 ·No. 10 ·1979-07-25 ·Pages 3231-53

Erard M, Das GC, de Murcia G, Mazen A, Pouyet J, Champagne M, Daune M

Abstract

Ethidium bromide intercalation into DNA of nuclease digested erythrocyte chromatin and core particle, was followed at low ionic strength by fluorescence measurements, equilibrium dialysis using 14C labelled dye, circular dichroism and electron microscopy. High affinity binding sites in the chromatin are no more present in the core particle, i.e. when the linker is removed. In the case of core particle, a cooperative process occurs, accompanied by a partial stripping of the DNA from the core histone. Finally two populations of core particles can be detected by electron microscopy as far as their binding properties are concerned.

MeSH Terms
Animals Chemical Phenomena Chemistry Chickens Chromatin Circular Dichroism DNA/blood Erythrocytes/analysis Ethidium Kinetics Nucleic Acid Conformation Spectrometry, Fluorescence
Chemicals
Chromatin DNA Ethidium
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Erard M
Das G C
de Murcia G
Mazen A
Pouyet J
Champagne M
Daune M
References (34)
34 references, click to expand
  1. Compact oligomers and nucleosome phasing.
    Proc Natl Acad Sci U S A. 1978 Aug;75(8):3583-7 PMID: 278974
  2. Ultrastructure of chromatin subunits during unfolding, histone depletion, and reconstitution.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 1:43-55 PMID: 277357
  3. Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.
    J Mol Biol. 1978 Sep 15;124(2):391-420 PMID: 568667
  4. Measurement of the expected DNA lengthening caused by mono-and bisintercalating drugs using electron microscopy.
    Biopolymers. 1978 Apr;17(4):872-86 PMID: 656549
  5. Relaxation of chromatin structure induced by ethidium binding: 1--Micrococcal nuclease digestion of the ethidium--chromatin complex.
    Biochem Biophys Res Commun. 1978 Mar 15;81(1):193-8 PMID: 656095
  6. Superstructure and CD spectrum as probes of chromatin integrity.
    Nucleic Acids Res. 1978 Feb;5(2):523-35 PMID: 634797
  7. Reconstitution of chromatin: assembly of the nucleosome.
    Nucleic Acids Res. 1978 Feb;5(2):505-21 PMID: 634796
  8. Ethidium bromide (EB) binding to nucleosomal DNA. Effects on DNA cleavage patterns.
    Exp Cell Res. 1977 Oct 15;109(2):309-15 PMID: 913495
  9. The structure of chromatin: interaction of ethidium bromide with native and denatured chromatin.
    Biochemistry. 1977 Feb 8;16(3):351-7 PMID: 836790
  10. Isolation, characterization, and structure of the folded interphase genome of Drosophila melanogaster.
    Cell. 1976 Nov;9(3):393-407 PMID: 825231
  11. Conformational state of DNA in chromatin subunits. Circular dichroism, melting, and ethidium bromide binding analysis.
    Nucleic Acids Res. 1976 Nov;3(11):2879-93 PMID: 1005108
  12. Relaxation of chromatin structure by ethidium bromide binding: determined by viscometry and histone dissociation studies.
    Biochemistry. 1976 Nov 2;15(22):4803-9 PMID: 990244
  13. A study of the interaction between ethidium bromide and rye chromatin: comparison with calf thymus chromatin.
    Nucleic Acids Res. 1976 Sep;3(9):2193-206 PMID: 987580
  14. Calculation of binding isotherms for heterogenous polymers.
    Biopolymers. 1968 Apr;6(4):575-84 PMID: 5644787
  15. Resolution of multiple ribonucleic acid species by polyacrylamide gel electrophoresis.
    Biochemistry. 1967 Jun;6(6):1818-27 PMID: 6035921
  16. Studies on the structure of deoxyribonucleoproteins. Spectroscopic characterization of the ethidium bromide binding sites.
    Biochemistry. 1974 Mar 12;13(6):1075-82 PMID: 4856024
  17. Interaction of closed circular DNA with intercalative dyes. II. The free energy of superhelix formation in SV40 DNA.
    J Mol Biol. 1970 Feb 14;47(3):419-35 PMID: 4313852
  18. The use of intercalating dye molecules in the study of chromatin structure.
    Chem Biol Interact. 1974 May;8(5):303-12 PMID: 4599421
  19. Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.
    J Mol Biol. 1974 Jun 25;86(2):469-89 PMID: 4416620
  20. Ethidium bromide as a probe of chromatin structure.
    FEBS Lett. 1974 Mar 15;40(1):9-12 PMID: 4859321
  21. Optical properties of the deoxyribonucleic acid-ethidium bromide complex. Effect of salt.
    Biochemistry. 1973 Mar 13;12(6):1213-21 PMID: 4734663
  22. Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease.
    Biochem Biophys Res Commun. 1973 May 15;52(2):504-10 PMID: 4711166
  23. Binding of ethidium bromide to avian erythrocyte chromatin.
    Biochem Biophys Res Commun. 1972 Feb 16;46(3):1399-404 PMID: 5012175
  24. A new preparation method for dark-field electron microscopy of biomacromolecules.
    J Ultrastruct Res. 1971 Apr;35(1):147-67 PMID: 4931423
  25. Ethidium bromide as a probe of conformational heterogeneity of DNA in chromatin. The role of histone H1.
    Biochemistry. 1976 Jul 27;15(15):3301-7 PMID: 952858
  26. Binding of ethidium bromide to fractionated chromatin.
    Exp Cell Res. 1976 Jul;100(2):223-7 PMID: 939250
  27. Evidence of altered histone interactions, as investigated by removal of histones, in chromatin isolated from rat liver nuclei by a conventional method.
    Nucleic Acids Res. 1975 Oct;2(10):1975-85 PMID: 1187351
  28. Histones H2a, H2b, H3, and H4 form a tetrameric complex in solutions of high salt.
    Cell. 1975 Sep;6(1):85-110 PMID: 1164735
  29. Comparison between histones FV and F2a2 of chicken erythrocyte. II. Interaction with homologous DNA.
    Biochim Biophys Acta. 1975 Jun 2;395(1):16-27 PMID: 1138932
  30. Thermal denaturation of the DNA-ethidium complex. Redistribution of the intercalated dye during melting.
    Biochemistry. 1975 Jan 28;14(2):326-31 PMID: 1168063
  31. Electron microscopic and biochemical evidence that chromatin structure is a repeating unit.
    Cell. 1975 Apr;4(4):281-300 PMID: 1122558
  32. The circular dichroism in the ultraviolet of aminoacridines and ethidium bromide bound to DNA.
    Biopolymers. 1971 Oct;10(10):1853-63 PMID: 5165064
  33. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  34. A fluorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization.
    J Mol Biol. 1967 Jul 14;27(1):87-106 PMID: 6033613
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1979-07-25
Pages
3231-53
Language
English
Region
England
NLM ID
0411011
PMCID
PMC327931
Subset
IM
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