Home LiteratureArticle Details
PMID: 6087277 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Interruption of a human nuclear sequence homologous to mitochondrial DNA by a member of the KpnI 1.8 kb family.

Nucleic acids research ·Vol. 12 ·No. 13 ·1984-07-11 ·Pages 5225-34

Nomiyama H, Tsuzuki T, Wakasugi S, Fukuda M, Shimada K

Abstract

We reported that several DNA sequences homologous to mitochondrial DNA (mtDNA) are present in the human nuclear genome (Tsuzuki et al. (1983) Gene 25, 223-229). Detailed Southern blot analyses revealed that one of such sequences is interrupted by a repetitive sequence about 1.8 kb long, and that the insert is one member of the dispersed repeated DNA sequences of the KpnI 1.8 kb family. Nucleotide sequence analysis showed that the KpnI 1.8 kb DNA is flanked with imperfect 15-base pair (bp) direct repeats of mtDNA. This KpnI 1.8 kb DNA has an A-rich sequence at its 3'-end, and has a considerable homology with one of the published cDNA sequences homologous to one of the human KpnI families and also to one of the African green monkey KpnI families, KpnI-LS1. These structural features suggest that the KpnI 1.8 kb DNA is a movable element and is inserted within the mtDNA-like sequence by an RNA-mediated process.

MeSH Terms
Animals Base Composition Base Sequence Cell Nucleus/metabolism Chlorocebus aethiops DNA/analysis,genetics DNA Restriction Enzymes/metabolism DNA, Mitochondrial/genetics Deoxyribonucleases, Type II Site-Specific Escherichia coli/genetics Genes Humans Nucleic Acid Hybridization Plasmids Species Specificity
Chemicals
DNA, Mitochondrial DNA DNA Restriction Enzymes Deoxyribonucleases, Type II Site-Specific GGTACC-specific type II deoxyribonucleases
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Nomiyama H
Tsuzuki T
Wakasugi S
Fukuda M
Shimada K
References (27)
27 references, click to expand
  1. A general method for isolation of high molecular weight DNA from eukaryotes.
    Nucleic Acids Res. 1976 Sep;3(9):2303-8 PMID: 987581
  2. Rearranged sequences of a human Kpn I element.
    Proc Natl Acad Sci U S A. 1984 Feb;81(4):1012-6 PMID: 6322182
  3. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  4. The evolution of genes: the chicken preproinsulin gene.
    Cell. 1980 Jun;20(2):555-66 PMID: 7388949
  5. Cloning of human mitochondrial DNA in Escherichia coli.
    J Mol Biol. 1980 Jun 15;140(1):15-34 PMID: 6251232
  6. The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl-paper.
    Anal Biochem. 1980 Nov 15;109(1):123-9 PMID: 6162401
  7. Sequence and organization of the human mitochondrial genome.
    Nature. 1981 Apr 9;290(5806):457-65 PMID: 7219534
  8. Direct repeats flank three small nuclear RNA pseudogenes in the human genome.
    Cell. 1981 Oct;26(1 Pt 1):11-7 PMID: 6173130
  9. Short interspersed repetitive DNA elements in eucaryotes: transposable DNA elements generated by reverse transcription of RNA pol III transcripts?
    Cell. 1981 Oct;26(2 Pt 2):141-2 PMID: 6277493
  10. KpnI families of long, interspersed repetitive DNAs in human and other primate genomes.
    Nucleic Acids Res. 1982 May 25;10(10):3175-93 PMID: 6285290
  11. Repetitive sequences in eukaryotic DNA and their expression.
    Annu Rev Biochem. 1982;51:813-44 PMID: 7051966
  12. Rearranged mitochondrial genes in the yeast nuclear genome.
    Nature. 1983 Jan 27;301(5898):296-301 PMID: 6296698
  13. Mitochondrial DNA sequences in the nuclear genome of a locust.
    Nature. 1983 Feb 17-23;301(5901):631-4 PMID: 6298629
  14. Integration of mitochondrial gene sequences within the nuclear genome during senescence in a fungus.
    Nature. 1983 Mar 3;302(5903):86-8 PMID: 6828161
  15. KpnI families of long, interspersed repetitive DNAs associated with the human beta-globin gene cluster.
    Gene. 1982 Dec;20(3):397-407 PMID: 6299899
  16. Mitochondrial DNA sequences in the nuclear genome of Strongylocentrotus purpuratus.
    J Mol Biol. 1983 Apr 25;165(4):609-32 PMID: 6687903
  17. Transcription of the KpnI families of long interspersed DNAs in human cells.
    Nature. 1983 Jul 21-27;304(5923):277-80 PMID: 6306481
  18. Kpn I family of long interspersed repeated DNA sequences in primates: polymorphism of family members and evidence for transcription.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3966-70 PMID: 6306655
  19. The majority of cDNA clones with strong positive signals for the interferon-induction-specific sequences resemble mitochondrial ribosomal RNA genes.
    Biochem Biophys Res Commun. 1983 Jul 29;114(2):670-6 PMID: 6192820
  20. Some KpnI family members are associated with the Alu family in the human genome.
    Nucleic Acids Res. 1983 Oct 11;11(19):6837-46 PMID: 6314260
  21. Mitochondrial DNA and nuclear DNA from normal rat liver have a common sequence.
    Proc Natl Acad Sci U S A. 1983 Nov;80(21):6495-9 PMID: 6579536
  22. Kpn I family of long-dispersed repeated DNA sequences of man: evidence for entry into genomic DNA of DNA copies of poly(A)-terminated Kpn I RNAs.
    Proc Natl Acad Sci U S A. 1983 Nov;80(21):6533-7 PMID: 6195659
  23. Two-dimensional gel electrophoretic analysis of the HindIII 1.8-kb repetitive-sequence family in the human genome.
    Gene. 1983 Oct;24(2-3):179-90 PMID: 6315535
  24. Presence of mitochondrial-DNA-like sequences in the human nuclear DNA.
    Gene. 1983 Nov;25(2-3):223-9 PMID: 6662364
  25. Transcripts homologous to a long repeated DNA element in the human genome.
    J Biol Chem. 1984 Jan 25;259(2):1218-25 PMID: 6198321
  26. GENAS: a database system for nucleic acid sequence analysis.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):89-99 PMID: 6694905
  27. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-07-11
Pages
5225-34
Language
English
Region
England
NLM ID
0411011
PMCID
PMC318915
Subset
IM
Databases
GENBANK
X00743, X00744
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]