Home LiteratureArticle Details
PMID: 6186991 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Accurate and efficient in vitro splicing of purified precursor RNAs specified by early region 2 of the adenovirus 2 genome.

Nucleic acids research ·Vol. 11 ·No. 5 ·1983-03-11 ·Pages 1337-48

Goldenberg CJ, Hauser SD

Abstract

Polyadenylated and deproteinized nuclear RNA precursors encoded by early region 2 of the adenovirus 2 genome are spliced in vitro by nuclear extracts prepared from MOPC-315 mouse myeloma cells. The in vitro reaction excises sequences from two introns and attaches 5' sequences to the mRNA body. The nucleotide sequence across the splice junctions in the E2 RNAs processed in vitro was investigated by performing primer extensions in the presence of dideoxynucleotides and direct sequencing on polyacrylamide gels. We conclude that the in vitro splicing reaction is accurate and has the same precision as that of in vivo E2 cytoplasmic mRNA prepared from Ad2 infected cells. The efficiency of in vitro splicing by the nuclear extracts is very high. Approximately 80% of E2 RNA precursor, on a molar basis, are spliced in vitro to a mature RNA. These findings provide evidence that a nuclear extract prepared from MOPC-315 mouse myeloma cells is capable of accurate and efficient splicing of E2 RNA precursors.

MeSH Terms
Adenoviruses, Human/genetics Animals Base Sequence Carcinoma Cell Line Cell Nucleus/metabolism Genes Genes, Viral Humans Mice Mouth Neoplasms Nucleic Acid Hybridization Plasmacytoma Poly A/genetics RNA/genetics RNA, Messenger RNA, Viral/genetics Transcription, Genetic
Chemicals
RNA, Messenger RNA, Viral Poly A RNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Goldenberg C J
Hauser S D
References (38)
38 references, click to expand
  1. The structure of adenovirus 2 early nuclear and cytoplasmic RNAs.
    J Mol Biol. 1980 Feb 15;137(1):23-48 PMID: 7365795
  2. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  3. Determination of RNA sequences by primer directed synthesis and sequencing of their cDNA transcripts.
    Methods Enzymol. 1980;65(1):580-95 PMID: 6154870
  4. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3855-9 PMID: 6933441
  5. Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5201-5 PMID: 6159641
  6. Transcription of Simian virus 40 DNA in a HeLa whole cell extract.
    J Biol Chem. 1981 Jan 10;256(1):478-82 PMID: 6256354
  7. Speculations on RNA splicing.
    Cell. 1981 Mar;23(3):643-6 PMID: 7226224
  8. A small nuclear ribonucleoprotein is required for splicing of adenoviral early RNA sequences.
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1371-5 PMID: 6940164
  9. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  10. Transcription and processing of adenoviral RNA by extracts from HeLa cells.
    Proc Natl Acad Sci U S A. 1981 Jul;78(7):4092-6 PMID: 6945572
  11. Structure and organization of the gene coding for the DNA binding protein of adenovirus type 5.
    Nucleic Acids Res. 1981 Sep 25;9(18):4439-57 PMID: 6117824
  12. In vitro splicing of purified precursor RNAs specified by early region 2 of the adenovirus 2 genome.
    Proc Natl Acad Sci U S A. 1981 Sep;78(9):5430-4 PMID: 6946482
  13. Nucleotide sequence of the gene encoding adenovirus type 2 DNA binding protein.
    Nucleic Acids Res. 1982 Aug 11;10(15):4493-500 PMID: 6985485
  14. Accurate in vitro splicing of human beta-globin RNA.
    Nucleic Acids Res. 1982 Sep 25;10(18):5429-45 PMID: 6292841
  15. Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
    Cell. 1982 Nov;31(1):147-57 PMID: 6297745
  16. In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence.
    Cell. 1981 Dec;27(3 Pt 2):487-96 PMID: 6101203
  17. Physical mapping of temperature-sensitive mutations of adenoviruses.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 1:439-46 PMID: 169087
  18. Hybridization maps of early and late messenger RNA sequences on the adenovirus type 2 genome.
    J Mol Biol. 1976 Mar 15;101(4):479-501 PMID: 1263260
  19. Location and identification of the genes for adenovirus type 2 early polypeptides.
    Cell. 1976 Jan;7(1):141-51 PMID: 949741
  20. Nuclear transcripts larger than the cytoplasmic mRNAs are specified by segments of the adenovirus genome coding for early functions.
    Cell. 1976 Jun;8(2):205-13 PMID: 971484
  21. Cell transformation: a study of regulation with types 5 and 12 adenovirus temperature-sensitive mutants.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 1:419-26 PMID: 1057471
  22. The topography and transcription of the adenovirus genome.
    Cell. 1977 Feb;10(2):153-66 PMID: 837446
  23. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  24. Loop structures in hybrids of early RNA and the separated strands of adenovirus DNA.
    Proc Natl Acad Sci U S A. 1977 Oct;74(10):4392-5 PMID: 270682
  25. Why genes in pieces?
    Nature. 1978 Feb 9;271(5645):501 PMID: 622185
  26. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  27. Transcription and processing of intervening sequences in yeast tRNA genes.
    Cell. 1978 Jun;14(2):221-36 PMID: 352537
  28. Structure of the adenovirus 2 early mRNAs.
    Cell. 1978 Jul;14(3):695-711 PMID: 688389
  29. Implications of RNA-RNA splicing in evolution of eukaryotic cells.
    Science. 1978 Dec 22;202(4374):1257-60 PMID: 364651
  30. Splicing patterns of nuclear precursors to the mRNA for adenovirus 2 DNA binding protein.
    Cell. 1979 Jan;16(1):131-8 PMID: 421267
  31. Rapid sequence determination of late simian virus 40 16S mRNA leader by using inhibitors of reverse transcriptase.
    Proc Natl Acad Sci U S A. 1979 Feb;76(2):731-5 PMID: 85304
  32. Split genes and RNA splicing.
    Science. 1979 Apr 20;204(4390):264-71 PMID: 373120
  33. In vitro transcription and processing of a yeast tRNA gene containing an intervening sequence.
    Cell. 1979 Jun;17(2):399-406 PMID: 378410
  34. RNA processing and the intervening sequence problem.
    Annu Rev Biochem. 1979;48:1035-69 PMID: 112912
  35. Selective and accurate initiation of transcription at the Ad2 major late promotor in a soluble system dependent on purified RNA polymerase II and DNA.
    Cell. 1979 Oct;18(2):469-84 PMID: 498279
  36. Splicing of yeast tRNA precursors: structure of the reaction intermediates.
    Cell. 1979 Sep;18(1):37-45 PMID: 389432
  37. Are snRNPs involved in splicing?
    Nature. 1980 Jan 10;283(5743):220-4 PMID: 7350545
  38. Complex splicing patterns of RNAs from the early regions of adenovirus-2.
    J Mol Biol. 1979 Oct 25;134(2):265-303 PMID: 537065
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1983-03-11
Pages
1337-48
Language
English
Region
England
NLM ID
0411011
PMCID
PMC325800
Subset
IM
Grants
NIAID NIH HHS · IR01 AI 19370-01 · United States
Databases
GENBANK
J01917, J01918, J01919, J01920, J01921, J01922, J01923, J01924, J01925, J01926, J01927, J01928, J01929, J01930, J01931, J01932, J01933, J01934, J01935, J01936, J01937, J01938, J01939, J01940, J01941, J01942, J01943, J01944, J01945, J01946
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]