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PMID: 6265921 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

DNA breakage and closure by rat liver type 1 topoisomerase: separation of the half-reactions by using a single-stranded DNA substrate.

Been MD, Champoux JJ

Abstract

Circular single strands of bacteriophage phi X174 DNA are broken by rat liver DNA nicking-closing enzyme (type 1 topoisomerase) in low salt (50 mM KCl) at 37 degrees C, generating linear strands containing covalently bound enzyme [Been, M. D. & Champoux, J. J. (1980) Nucleic Acids Res. 8, 6129-6142]. The linear strands can be recircularized in the presence of 10 mM MgCl2 at 24 degrees C and 37 degrees C or 250 mM KCl at 24 degrees C. Recircularization is blocked when the hydroxyl group at the 5' terminus is phosphorylated. The linears generated by the nicking-closing enzyme can also be joined to other DNA fragments containing 5' hydroxyls, but not 5' phosphates. The linkage formed in both the intrastrand and interstrand reactions is stable to alkali. Reclosure of broken single strands is presumed to be analogous to the closure step that occurs durng nicking and closing cycles on duplex DNA.

MeSH Terms
Animals Bacteriophage phi X 174 DNA Helicases/metabolism DNA Topoisomerases, Type I/metabolism DNA, Single-Stranded/metabolism DNA, Viral/metabolism Kinetics Liver/enzymology Rats Substrate Specificity
Chemicals
DNA, Single-Stranded DNA, Viral DNA Helicases DNA Topoisomerases, Type I
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Been M D
Champoux J J
References (27)
27 references, click to expand
  1. Physical and topological properties of circular DNA.
    J Gen Physiol. 1966 Jul;49(6):103-25 PMID: 4290891
  2. Interaction between DNA and an Escherichia coli protein omega.
    J Mol Biol. 1971 Feb 14;55(3):523-33 PMID: 4927945
  3. An activity from mammalian cells that untwists superhelical DNA--a possible swivel for DNA replication (polyoma-ethidium bromide-mouse-embryo cells-dye binding assay).
    Proc Natl Acad Sci U S A. 1972 Jan;69(1):143-6 PMID: 4333036
  4. A simple method of preparing large amounts of phiX174 RF 1 supercoiled DNA.
    Biochim Biophys Acta. 1973 Apr 11;299(4):516-20 PMID: 4575181
  5. Priming of superhelical SV40 DNA by Escherichia coli RNA polymerase for in vitro DNA synthesis.
    Biochemistry. 1975 Jan 28;14(2):307-16 PMID: 164202
  6. Purification and characterization of the DNA untwisting enzyme from rat liver.
    Biochemistry. 1976 Oct 19;15(21):4638-42 PMID: 184821
  7. Knotted single-stranded DNA rings: a novel topological isomer of circular single-stranded DNA formed by treatment with Escherichia coli omega protein.
    J Mol Biol. 1976 Sep 15;106(2):439-52 PMID: 789893
  8. Evidence for an intermediate with a single-strand break in the reaction catalyzed by the DNA untwisting enzyme.
    Proc Natl Acad Sci U S A. 1976 Oct;73(10):3488-91 PMID: 1068461
  9. phiX174 cistron A protein is a multifunctional enzyme in DNA replication.
    Proc Natl Acad Sci U S A. 1977 Aug;74(8):3198-202 PMID: 269383
  10. Strand breakage by the DNA untwisting enzyme results in covalent attachment of the enzyme to DNA.
    Proc Natl Acad Sci U S A. 1977 Sep;74(9):3800-4 PMID: 198805
  11. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4767-71 PMID: 200930
  12. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4772-6 PMID: 337300
  13. Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein.
    J Biol Chem. 1978 Jan 25;253(2):511-8 PMID: 338610
  14. Renaturation of complementary single-stranded DNA circles: complete rewinding facilitated by the DNA untwisting enzyme.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5328-32 PMID: 202951
  15. Mechanism of the reaction catalyzed by the DNA untwisting enzyme: attachment of the enzyme to 3'-terminus of the nicked DNA.
    J Mol Biol. 1978 Jan 25;118(3):441-6 PMID: 204790
  16. Involement of supertwisted DNA in integrative recombination of bacteriophage lambda.
    J Mol Biol. 1978 May 25;121(3):375-92 PMID: 353288
  17. Proteins that affect DNA conformation.
    Annu Rev Biochem. 1978;47:449-79 PMID: 209728
  18. Escherichia coli DNA topoisomerase I catalyzed linking of single-stranded rings of complementary base sequences.
    Nucleic Acids Res. 1978 Oct;5(10):3811-20 PMID: 214763
  19. On the fidelity of DNA replication. Effect of divalent metal ion activators and deoxyrionucleoside triphosphate pools on in vitro mutagenesis.
    J Biol Chem. 1979 Jul 10;254(13):5718-25 PMID: 376517
  20. Nicking-closing activity associated with bacteriophage lambda int gene product.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3760-4 PMID: 226979
  21. Interaction between DNA and Escherichia coli DNA topoisomerase I. Formation of complexes between the protein and superhelical and nonsuperhelical duplex DNAs.
    J Biol Chem. 1979 Nov 10;254(21):11082-8 PMID: 227859
  22. Type II DNA topoisomerases: enzymes that can unknot a topologically knotted DNA molecule via a reversible double-strand break.
    Cell. 1980 Mar;19(3):697-707 PMID: 6244895
  23. DNA gyrase action involves the introduction of transient double-strand breaks into DNA.
    Proc Natl Acad Sci U S A. 1980 Apr;77(4):1847-51 PMID: 6246508
  24. Formation and resolution of DNA catenanes by DNA gyrase.
    Cell. 1980 May;20(1):245-54 PMID: 6248235
  25. Analysis of covalent complexes formed between calf thymus DNA topoisomerase and single-stranded DNA.
    Eur J Biochem. 1980 Jul;108(2):389-98 PMID: 6250832
  26. DNA gyrase subunit stoichiometry and the covalent attachment of subunit A to DNA during DNA cleavage.
    Nucleic Acids Res. 1980 Sep 11;8(17):3865-74 PMID: 6255421
  27. Breakage of single-stranded DNA by rat liver nicking-closing enzyme with the formation of a DNA-enzyme complex.
    Nucleic Acids Res. 1980 Dec 20;8(24):6129-42 PMID: 6258163
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1981-05-00
Pages
2883-7
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC319463
Subset
IM
Grants
NIGMS NIH HHS · GM23224 · United States
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