Home LiteratureArticle Details
PMID: 6348703 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Molecular basis for modulated regulation of gene expression in the arginine regulon of Escherichia coli K-12.

Nucleic acids research ·Vol. 11 ·No. 15 ·1983-08-11 ·Pages 5007-19

Cunin R, Eckhardt T, Piette J, Boyen A, Piérard A, Glansdorff N

Abstract

We compare the nucleotide sequences of the regulatory regions of five genes or groups of genes of the arginine regulon of Escherichia coli K-12: argF, argI, argR, the bipolar argECBH operon and the carAB operon. All these regions harbour one or two copies of a conserved 18 bp sequence which appears to constitute the basic arginine operator sequence (ARG box). We discuss the influence of ARG box copy number, degree of dyad symmetry, base composition, and position relative to the cognate promoter site on the derepression-repression ratios of the genes of the regulon. A novel hypothesis, based on structural considerations, is also put forward to account for the absence ot attenuation control.

MeSH Terms
Arginine/biosynthesis,genetics Base Sequence Escherichia coli/genetics Genes Genes, Bacterial Genes, Regulator Operon Transcription, Genetic
Chemicals
Arginine
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Cunin R
Eckhardt T
Piette J
Boyen A
Piérard A
Glansdorff N
References (37)
37 references, click to expand
  1. Coordination of enzyme synthesis in the arginine pathway of Escherichia coli K-12.
    Biochim Biophys Acta. 1965 Oct 11;108(2):308-11 PMID: 5325238
  2. Control of the biosynthesis of carbamoyl phosphate in Escherichia coli.
    J Mol Biol. 1965 Nov;14(1):23-36 PMID: 5327652
  3. A mechanism for repressor action.
    J Mol Biol. 1969 Jul 14;43(1):201-13 PMID: 4897791
  4. On the functional organization of the arg ECBH cluster of genes in Escherichia coli K-12.
    Mol Gen Genet. 1969;106(1):32-47 PMID: 4905438
  5. Regulation at the level of translation in the arginine pathway of Escherichia coli K12.
    J Mol Biol. 1970 Jul 28;51(2):449-51 PMID: 4922206
  6. Reversible dissociation of carbamyl phosphate synthetase into a regulated synthesis subunit and a subunit required for glutamine utilization.
    Proc Natl Acad Sci U S A. 1971 Oct;68(10):2599-603 PMID: 4944634
  7. Studies on the mechanism of repression of arginine biosynthesis in Escherichia coli. IV. Further studies on the role of arginine transfer RNA repression of the enzymes of arginine biosynthesis.
    J Mol Biol. 1971 Nov 28;62(1):179-88 PMID: 4945528
  8. Mutations affecting uridine monophosphate pyrophosphorylase or the argR gene in Escherichia coli. Effects on carbamoyl phosphate and pyrimidine biosynthesis and on uracil uptake.
    Mol Gen Genet. 1972;118(3):235-45 PMID: 4343250
  9. N-Acetylglutamate synthase of Escherichia coli regulation of synthesis and activity by arginine.
    J Biol Chem. 1975 Mar 10;250(5):1690-3 PMID: 1089665
  10. Parameters of gene expression in the bipolar argECBH operon of E. coli K12. The question of translational control.
    Mol Gen Genet. 1975 Sep 15;140(1):51-60 PMID: 1102951
  11. Dual regulation by arginine of the expression of the Escherichia coli argECBH operon.
    J Bacteriol. 1976 Apr;126(1):348-64 PMID: 770426
  12. Involvement of arginine in in vitro repression of transcription of arginine genes C, B and H in Escherichia coli K 12.
    Biochem Biophys Res Commun. 1976 Mar 22;69(2):377-82 PMID: 773376
  13. Nucleotide sequence changes produced by mutations in the lac promoter of Escherichia coli.
    J Mol Biol. 1977 Mar 25;111(1):65-75 PMID: 323498
  14. On the physical basis for ambiguity in genetic coding interactions.
    Proc Natl Acad Sci U S A. 1978 Feb;75(2):610-4 PMID: 273223
  15. Studies on the control region of the bipolar argECBH operon of Escherichia coli. I. Effect of regulatory mutations and IS2 insertions.
    Mol Gen Genet. 1978 May 3;161(2):185-96 PMID: 353508
  16. Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon.
    Proc Natl Acad Sci U S A. 1978 Dec;75(12):5988-92 PMID: 366606
  17. Unusual location and function of the operator in the Escherichia coli galactose operon.
    Nature. 1979 Jun 7;279(5713):494-500 PMID: 221831
  18. Specificity of codon recognition by Escherichia coli tRNALeu isoaccepting species determined by protein synthesis in vitro directed by phage RNA.
    J Mol Biol. 1979 Apr 25;129(4):567-85 PMID: 383997
  19. Tandem and inverted repeats of arginine genes in Escherichia coli: structural and evolutionary considerations.
    Mol Gen Genet. 1979 Jul 2;174(1):75-88 PMID: 384163
  20. leu operon of Salmonella typhimurium is controlled by an attenuation mechanism.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4941-5 PMID: 388423
  21. Role of transcriptional regulation and enzyme inactivation in the synthesis of Escherichia coli carbamoylphosphate synthase.
    J Bacteriol. 1980 Jan;141(1):382-5 PMID: 6153385
  22. The effect of an Escherichia coli regulatory mutation on transfer RNA structure.
    J Mol Biol. 1979 Nov 25;135(1):111-26 PMID: 93644
  23. Use of gene cloning to determine polarity of an operon: genes carAB of Escherichia coli.
    J Bacteriol. 1980 Aug;143(2):921-5 PMID: 6451616
  24. Codon catalog usage is a genome strategy modulated for gene expressivity.
    Nucleic Acids Res. 1981 Jan 10;9(1):r43-74 PMID: 7208352
  25. Nucleotide sequence and expression of Escherichia coli trpR, the structural gene for the trp aporepressor.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7117-21 PMID: 7012834
  26. Termination of transcription and its regulation in the tryptophan operon of E. coli.
    Cell. 1981 Apr;24(1):10-23 PMID: 7016334
  27. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.
    J Mol Biol. 1981 Feb 15;146(1):1-21 PMID: 6167728
  28. Pausing of RNA polymerase during in vitro transcription of the tryptophan operon leader region.
    Biochemistry. 1981 Jun 23;20(13):3738-44 PMID: 6168281
  29. Mechanism of action of the lexA gene product.
    Proc Natl Acad Sci U S A. 1981 Jul;78(7):4204-8 PMID: 7027256
  30. Nucleotide sequence of the argF regulatory region of Escherichia coli K-12.
    Gene. 1981 Dec;16(1-3):119-32 PMID: 6282686
  31. Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.
    Gene. 1982 Jun;18(3):199-209 PMID: 6751939
  32. The regulatory region of the divergent argECBH operon in Escherichia coli K-12.
    Nucleic Acids Res. 1982 Dec 20;10(24):8031-48 PMID: 6761650
  33. Homologies between different procaryotic DNA-binding regulatory proteins and between their sites of action.
    EMBO J. 1982;1(5):591-5 PMID: 6234163
  34. Homologous control sites and DNA transcription starts in the related argF and argI genes of Escherichia coli K12.
    EMBO J. 1982;1(7):853-7 PMID: 6329710
  35. In vitro transcription of the Escherichia coli K-12 argA, argE, and argCBH operons.
    J Bacteriol. 1977 May;130(2):642-55 PMID: 400784
  36. Studies on repression of arginine biosynthesis in Escherichia coli.
    Cold Spring Harb Symp Quant Biol. 1961;26:183-91 PMID: 14467697
  37. Symposium on multiple forms of enzymes and control mechanisms. III. Control by repression of a biochemical pathway.
    Bacteriol Rev. 1963 Jun;27:182-90 PMID: 13949286
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1983-08-11
Pages
5007-19
Language
English
Region
England
NLM ID
0411011
PMCID
PMC326233
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]