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PMID: 6430697 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Mutations affecting excision of the intron from a eukaryotic dimeric tRNA precursor.

The EMBO journal ·Vol. 3 ·No. 7 ·1984-07-00 ·Pages 1573-80

Willis I, Hottinger H, Pearson D, Chisholm V, Leupold U, Söll D

Abstract

The nucleotide sequences of a Schizosaccharomyces pombe opal suppressor serine tRNA gene (sup9-e) and of 12 in vivo-generated mutant genes, which have lost the ability to suppress UGA mutations, have been determined. Analysis of the expression of these genes in Saccharomyces cerevisiae in vitro and in vivo systems has revealed defects in tRNA gene transcription and precursor tRNA processing. Single base changes in the D-loop, the intron and the extra arm affect the efficiency of splicing of the tRNA precursors while an anti-codon stem mutation may affect the accuracy of this process. Two mutations which occur in the intervening sequence of the sup9-e gene allow an alternate tRNA base pairing configuration. Transcription of the sup9-e gene and of the adjacent tRNAMet gene (located 7 bp downstream) is essentially abolished in vivo by a G----A19 mutation in the tRNASer gene, suggesting that tRNAMet may be derived solely via processing of the tRNASer-tRNAMet dimeric precursor.

MeSH Terms
Ascomycota/genetics Base Sequence Genes Mutation Nucleic Acid Conformation Nucleic Acid Precursors/genetics RNA Processing, Post-Transcriptional RNA, Transfer/genetics Schizosaccharomyces/genetics Serine
Chemicals
Nucleic Acid Precursors Serine RNA, Transfer
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Willis I
Hottinger H
Pearson D
Chisholm V
Leupold U
Söll D
References (33)
33 references, click to expand
  1. Genetic analysis of the processing of a spliced tRNA.
    EMBO J. 1982;1(2):263-8 PMID: 6926726
  2. tRNA synthesis: identification of in vivo precursor tRNAs from parental and mutant yeast strains.
    Nucleic Acids Res. 1981 Feb 25;9(4):1019-29 PMID: 7015284
  3. Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.
    Cell. 1983 Feb;32(2):525-36 PMID: 6186398
  4. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1035-9 PMID: 375221
  5. Specific interactions of Saccharomyces cerevisiae proteins with a promoter region of eukaryotic tRNA genes.
    Proc Natl Acad Sci U S A. 1982 Oct;79(20):6191-5 PMID: 6755466
  6. Preparation of RNA and ribosomes from yeast.
    Methods Cell Biol. 1975;12:45-64 PMID: 1105073
  7. tRNA gene transcription in yeast: effects of specified base substitutions in the intragenic promoter.
    Cell. 1983 Nov;35(1):117-25 PMID: 6226365
  8. Molecular cloning of the SUF2 frameshift suppressor gene from Saccharomyces cerevisiae.
    Gene. 1981 Sep;14(4):263-78 PMID: 6271627
  9. Promoter of a eukaryotic tRNAPro gene is composed of three noncontiguous regions.
    Proc Natl Acad Sci U S A. 1982 Feb;79(4):1195-9 PMID: 6951168
  10. Nonsense suppression in Schizosaccharomyces pombe: the S. pombe Sup3-e tRNASerUGA gene is active in S. cerevisiae.
    Mol Gen Genet. 1982;188(2):219-24 PMID: 6818425
  11. A detailed mutational analysis of the eucaryotic tRNAmet1 gene promoter.
    Cell. 1983 Jun;33(2):585-93 PMID: 6552939
  12. Dimeric transfer RNA precursors in S. pombe.
    Cell. 1980 Sep;21(2):509-16 PMID: 7407924
  13. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  14. Isolation of yeast DNA.
    Methods Cell Biol. 1975;12:39-44 PMID: 1105072
  15. An in vitro RNA polymerase III system from S. cerevisiae: effects of deletions and point mutations upon SUP4 gene transcription.
    Nucleic Acids Res. 1982 Dec 20;10(24):8127-43 PMID: 6298710
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. Site-directed mutagenesis of a tRNA gene: base alterations in the coding region affect transcription.
    Proc Natl Acad Sci U S A. 1982 Mar;79(5):1388-92 PMID: 6951183
  18. Internal control regions for transcription of eukaryotic tRNA genes.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):6657-61 PMID: 6947245
  19. Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements.
    Nature. 1981 Dec 17;294(5842):626-31 PMID: 7312050
  20. In vivo decoding rules in Schizosaccharomyces pombe are at variance with in vitro data.
    Nature. 1981 Nov 12;294(5837):187-8 PMID: 7300901
  21. The 5- flanking sequences of Drosophila tRNAArg genes control their in vitro transcription in a Drosophila cell extract.
    J Biol Chem. 1982 Dec 25;257(24):14738-44 PMID: 6924656
  22. Yeast tRNA precursor mutated at a splice junction is correctly processed in vivo.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):415-9 PMID: 7017715
  23. Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5350-4 PMID: 414220
  24. Mutations at the yeast SUP4 tRNATyr locus: DNA sequence changes in mutants lacking suppressor activity.
    Cell. 1980 Jul;20(3):701-9 PMID: 6998562
  25. Characterization of a UGA-suppressing serine tRNA from Schizosaccharomyces pombe with the help of a new in vitro assay system for eukaryotic suppressor tRNAs.
    J Biol Chem. 1979 Mar 10;254(5):1546-51 PMID: 762155
  26. The nucleotide sequence of a UGA suppressor serine tRNA from Schizosaccharomyces pombe.
    Nucleic Acids Res. 1979 Jun 25;6(8):2683-95 PMID: 461200
  27. The Schizosaccharomyces pombe sup3-i suppressor recognizes ochre, but not amber codons in vitro and in vivo.
    EMBO J. 1984 Feb;3(2):423-8 PMID: 6370683
  28. Mutations in Box B of the promoter of a eucaryotic tRNAPro gene affect rate of transcription, processing, and stability of the transcripts.
    Cell. 1984 Jan;36(1):179-87 PMID: 6559106
  29. The promoter sequence of a yeast tRNAtyr gene.
    Cell. 1983 Sep;34(2):655-64 PMID: 6352054
  30. Genetic Mapping in SCHIZOSACCHAROMYCES POMBE by Mitotic and Meiotic Analysis and Induced Haploidization.
    Genetics. 1977 Nov;87(3):471-89 PMID: 17248775
  31. Mutation in the a block of the yeast tRNAleu3 gene that allows transcription but abolishes splicing and 5'-end maturation.
    Cell. 1983 Jan;32(1):67-76 PMID: 6337723
  32. Mutations of the yeast SUP4 tRNATyr locus: transcription of the mutant genes in vitro.
    Cell. 1980 Nov;22(2 Pt 2):415-25 PMID: 7004643
  33. Specific transcription of homologous class III genes in yeast-soluble cell-free extracts.
    J Biol Chem. 1982 Jul 25;257(14):8432-41 PMID: 7045122
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1984-07-00
Pages
1573-80
Language
English
Region
England
NLM ID
8208664
PMCID
PMC557561
Subset
IM
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