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PMID: 7241 Published · ppublish English Journal Article

PH-dependence of the steady-state rate of a two-step enzymic reaction.

The Biochemical journal ·Vol. 155 ·No. 1 ·1976-04-01 ·Pages 61-70

Brocklehurst K, Dixon HB

Abstract

1. The pH-dependence is considered of a reaction between E and S that proceeds through an intermediate ES under "Briggs-Haldane' conditions, i.e. there is a steady state in ES and [S]o greater than [E]T, where [S]o is the initial concentration of S and [E]T is the total concentration of all forms of E. Reactants and intermediates are assumed to interconvert in three protonic states (E equilibrium ES; EH equilibrium EHS; EH2 equilibrium EH2S), but only EHS provides products by an irreversible reaction whose rate constant is kcat. Protonations are assumed to be so fast that they are all at equilibrium. 2. The rate equation for this model is shown to be v = d[P]/dt = (kcat.[E]T[S]o/A)/[(KmBC/DA) + [S]o], where Km is the usual assembly of rate constants around EHS and A-D are functions of the form (1 + [H]/K1 + K2/[H]), in which K1 and K2 are: in A, the molecular ionization constants of ES; in B, the analogous constants of E; in C and D, apparent ionization constants composed of molecular ionization constants (of E or ES) and assemblies of rate constants. 3. As in earlier treatments of this type of reaction which involve either the assumption that the reactants and intermediate are in equilibrium or the assumption of Peller & Alberty [(1959) J. Am. Chem. Soc. 81, 5907-5914] that only EH and EHS interconvert directly, the pH-dependence of kcat. is determined only by A. 4. The pH-dependence of Km is determined in general by B-C/A-D, but when reactants and intermediate are in equilibrium, C identical to D and this expression simplifies to B/A. 5. The pH-dependence of kcat./Km, i.e. of the rate when [S]o less than Km, is not necessarily a simple bell-shaped curve characterized only by the ionization constants of B, but is a complex curve characterized by D/B-C. 6. Various situations are discussed in which the pH-dependence of kcat./Km is determined by assemblies simpler than D/B-C. The special situation in which a kcat./Km-pH profile provides the molecular pKa values of the intermediate ES complex is delineated.

MeSH Terms
Enzymes/metabolism Hydrogen-Ion Concentration Kinetics Mathematics Models, Chemical
Chemicals
Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Brocklehurst K
Dixon H B
References (26)
26 references, click to expand
  1. Chymotrypsin catalysis. Evidence for a new intermediate.
    J Am Chem Soc. 1969 Jun 18;91(13):3639-45 PMID: 5784192
  2. Estimation of the dissociation constants of enzyme-substrate complexes from steady-state measurements. Interpretation of pH-independence of Km.
    Biochem J. 1976 Feb 1;153(2):455-61 PMID: 6011
  3. Factorization of the Michaelis functions.
    Biochem J. 1975 Nov;151(2):271-4 PMID: 1218081
  4. Shapes of curves of pH-dependence of reactions.
    Biochem J. 1973 Jan;131(1):149-54 PMID: 4722033
  5. The mutability of stem bromelain: evidence for perturbation by structural transitions of the parameters that characterize the reaction of the essential thiol group of bromelain with 2,2'-dipyridyl disulphide.
    Biochem J. 1972 Jul;128(4):979-82 PMID: 4638799
  6. The effects of hydrogen ion concentration on the simplest steady-state enzyme systems.
    Biochem J. 1971 Jul;123(3):445-53 PMID: 5126094
  7. Negatively co-operative ligand binding.
    Biochem J. 1973 Aug;133(4):837-42 PMID: 4748836
  8. Curves of ligand binding. The use of hyperbolic functions for expressing titration curves.
    Biochem J. 1974 Mar;137(3):443-7 PMID: 4420319
  9. Initial and equilibrium 18O, 14C, 3H, and 2H exchange rates as probes of the fumarase reaction mechanism.
    J Biol Chem. 1969 Nov 25;244(22):6270-9 PMID: 5350961
  10. PK of the lysine amino group at the active site of acetoacetate decarboxylase.
    Biochemistry. 1971 Mar 30;10(7):1249-53 PMID: 4324206
  11. A proteolytically activated tyrosinase from frog epidermis.
    J Biol Chem. 1974 May 25;249(10):3151-6 PMID: 4208474
  12. MECHANISM OF ACTION OF PROTEOLYTIC ENZYMES.
    Annu Rev Biochem. 1965;34:49-76 PMID: 14321178
  13. pH-dependence of the triose phosphate isomerase reaction.
    Biochem J. 1972 Sep;129(2):311-20 PMID: 4643319
  14. The pH-dependence of pepsin-catalysed reactions.
    Biochem J. 1969 Jun;113(2):353-62 PMID: 4897198
  15. The case for assigning a value of approximately 4 to pKa-i of the essential histidine-cysteine interactive systems of papain, bromelain and ficin.
    FEBS Lett. 1975 Feb 15;50(3):365-8 PMID: 234862
  16. A simple method for derivation of rate equations for enzyme-catalyzed reactions under the rapid equilibrium assumption or combined assumptions of equilibrium and steady state.
    J Biol Chem. 1968 Feb 25;243(4):820-5 PMID: 5638598
  17. Mechanism of chymotrypsin. Structure, reactivity, and nonproductive binding relationships.
    Biochemistry. 1973 Mar 13;12(6):1067-74 PMID: 4688860
  18. The kinetic analysis of hydrolytic enzyme catalyses: Consequences of non-productive binding.
    FEBS Lett. 1968 Nov;2(1):69-73 PMID: 11946271
  19. Some aspects of the kinetics of enzymic reactions.
    Biochim Biophys Acta. 1953 Jan;10(1):27-34 PMID: 13041708
  20. ELEMENTARY STEPS IN ENZYME REACTIONS (AS STUDIED BY RELAXATION SPECTROMETRY).
    Adv Enzymol Relat Areas Mol Biol. 1963;25:1-38 PMID: 14149678
  21. A pyrrolidonecarboxylate peptidase from the particulate fraction of Klebsiella cloacae. Purification of the stable enzyme and its use in releasing the NH2 terminus from pyrrolidonecarboxylyl peptides and proteins.
    J Biol Chem. 1974 Dec 25;249(24):7729-36 PMID: 4430671
  22. Purification and kinetic characterization of a monovalent cation-activated glycerol dehydrogenase from Aerobacter aerogenes.
    J Biol Chem. 1974 May 25;249(10):3132-9 PMID: 4364415
  23. Catalysis, binding and enzyme-substrate complementarity.
    Proc R Soc Lond B Biol Sci. 1974 Nov 19;187(1089):397-407 PMID: 4155501
  24. Mercaptide-imidazolium ion-pair: the reactive nucleophile in papain catalysis.
    FEBS Lett. 1974 Oct 1;47(1):15-8 PMID: 4426388
  25. The effect of pH on the affinities of enzymes for substrates and inhibitors.
    Biochem J. 1953 Aug;55(1):161-70 PMID: 13093634
  26. The advantages of transition state and group acid dissociation constants for pH-dependent enzyme kinetics.
    J Theor Biol. 1974 Dec;48(2):283-98 PMID: 4459587
Article Info
Journal
The Biochemical journal
Abbr.
Biochem J
ISSN
0264-6021
Published
1976-04-01
Pages
61-70
Language
English
Region
England
NLM ID
2984726R
PMCID
PMC1172802
Subset
IM
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