Home LiteratureArticle Details
PMID: 7511368 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

The regulation of ribosomal RNA synthesis and bacterial cell growth.

Archives of microbiology ·Vol. 161 ·No. 2 ·1994-00-00 ·Pages 100-9

Wagner R

Abstract

暂无摘要

MeSH Terms
Escherichia coli/genetics,growth & development Gene Expression Regulation, Bacterial/physiology Models, Genetic RNA, Bacterial/biosynthesis,genetics RNA, Ribosomal/biosynthesis,genetics Transcription, Genetic rRNA Operon/genetics
Chemicals
RNA, Bacterial RNA, Ribosomal
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Wagner R
Institut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, Germany.
References (80)
80 references, click to expand
  1. Molecular analysis of the Escherichia coli hns gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences.
    Mol Gen Genet. 1991 Nov;230(1-2):332-6 PMID: 1745240
  2. DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1.
    J Bacteriol. 1993 Mar;175(6):1580-9 PMID: 8449867
  3. Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation.
    Mol Microbiol. 1993 May;8(5):875-89 PMID: 8355613
  4. Decreasing transcription elongation rate in Escherichia coli exposed to amino acid starvation.
    Mol Microbiol. 1992 Aug;6(15):2191-200 PMID: 1406259
  5. Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
    J Bacteriol. 1982 Feb;149(2):458-68 PMID: 6173374
  6. Differential stringent control of the tandem E. coli ribosomal RNA promoters from the rrnA operon expressed in vivo in multicopy plasmids.
    Cell. 1983 Apr;32(4):1337-46 PMID: 6188537
  7. The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli.
    Nucleic Acids Res. 1991 Aug 11;19(15):4167-72 PMID: 1870971
  8. Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent.
    Nucleic Acids Res. 1992 Feb 25;20(4):719-26 PMID: 1542568
  9. E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo.
    EMBO J. 1990 Nov;9(11):3733-42 PMID: 2209559
  10. Identification, cloning, nucleotide sequence and chromosomal map location of hns, the structural gene for Escherichia coli DNA-binding protein H-NS.
    Mol Gen Genet. 1988 May;212(2):199-202 PMID: 2841565
  11. Promoter occlusion: transcription through a promoter may inhibit its activity.
    Cell. 1982 Jul;29(3):939-44 PMID: 6217898
  12. Promoter selectivity of Escherichia coli RNA polymerase: omega factor is responsible for the ppGpp sensitivity.
    Nucleic Acids Res. 1989 Nov 11;17(21):8755-65 PMID: 2685748
  13. Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters.
    Nucleic Acids Res. 1987 Jan 26;15(2):785-96 PMID: 3547329
  14. Regulation of the expression of the tufB operon: DNA sequences directly involved in the stringent control.
    EMBO J. 1985 Apr;4(4):1053-8 PMID: 2990906
  15. Evidence for a regulatory function of the histone-like Escherichia coli protein H-NS in ribosomal RNA synthesis.
    Mol Microbiol. 1994 Feb;11(3):589-604 PMID: 7512187
  16. Polyacrylamide gradient gel electrophoresis for the detection of bended DNA fragments.
    Nucleic Acids Res. 1990 May 11;18(9):2827 PMID: 2339073
  17. Promoter selectivity of Escherichia coli RNA polymerase. Differential stringent control of the multiple promoters from ribosomal RNA and protein operons.
    J Biol Chem. 1984 Feb 10;259(3):1951-7 PMID: 6363418
  18. Regulation of the synthesis of ribosomes and ribosomal components.
    Annu Rev Biochem. 1984;53:75-117 PMID: 6206783
  19. The omega subunit of Escherichia coli K-12 RNA polymerase is not required for stringent RNA control in vivo.
    J Bacteriol. 1991 Jun;173(12):3901-3 PMID: 1711031
  20. A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli.
    Cell. 1988 Feb 26;52(4):569-84 PMID: 2830029
  21. Functional characteristics of the rrnD promoters of Escherichia coli.
    J Biol Chem. 1991 Nov 15;266(32):21608-15 PMID: 1939190
  22. Analysis of the Fis-dependent and Fis-independent transcription activation mechanisms of the Escherichia coli ribosomal RNA P1 promoter.
    Biochemistry. 1992 Mar 10;31(9):2621-8 PMID: 1547242
  23. Influence of the GCGC discriminator motif introduced into the ribosomal RNA P2- and tac promoter on growth-rate control and stringent sensitivity.
    EMBO J. 1989 Nov;8(11):3357-63 PMID: 2479545
  24. Transposition of a chromosomal segment bounded by redundant rRNA genes into other rRNA genes in Escherichia coli.
    J Bacteriol. 1982 Feb;149(2):449-57 PMID: 6173373
  25. Functional interrelationship between two tandem E. coli ribosomal RNA promoters.
    Nature. 1983 Mar 3;302(5903):74-6 PMID: 6338396
  26. Analysis of sequence elements important for the synthesis and control of ribosomal RNA in E coli.
    Biochimie. 1991 Jun;73(6):699-712 PMID: 1764516
  27. Carbon starvation and growth rate-dependent regulation of the Escherichia coli ribosomal RNA promoters: differential control of dual promoters.
    Proc Natl Acad Sci U S A. 1983 Nov;80(22):7010-3 PMID: 6359160
  28. Guanosine tetraphosphate inhibits protein synthesis in vivo. A possible protective mechanism for starvation stress in Escherichia coli.
    J Biol Chem. 1993 Feb 5;268(4):2307-11 PMID: 8428905
  29. Enhancement of ribosomal ribonucleic acid synthesis by deoxyribonucleic acid gyrase activity in Escherichia coli.
    J Bacteriol. 1981 Dec;148(3):782-7 PMID: 6171557
  30. The chromatin-associated protein H-NS interacts with curved DNA to influence DNA topology and gene expression.
    Cell. 1992 Oct 16;71(2):255-65 PMID: 1423593
  31. Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli.
    Proc Natl Acad Sci U S A. 1990 Jul;87(14):5533-7 PMID: 2196571
  32. Coordinate regulation of the individual ribosomal RNA operons in Escherichia coli.
    Biochem Biophys Res Commun. 1976 Feb 9;68(3):969-74 PMID: 769792
  33. Promoter sequence for stringent control of bacterial ribonucleic acid synthesis.
    J Bacteriol. 1980 Feb;141(2):973-6 PMID: 6154042
  34. A new gene in E. coli RNA synthesis.
    Mol Gen Genet. 1983;189(2):314-20 PMID: 6190071
  35. The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid.
    Mol Gen Genet. 1990 Oct;224(1):81-90 PMID: 2177526
  36. Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein.
    Nucleic Acids Res. 1977 Aug;4(8):2725-45 PMID: 333393
  37. Deletion of a ribosomal ribonucleic acid operon in Escherichia coli.
    J Bacteriol. 1980 Aug;143(2):1077-80 PMID: 6162835
  38. Ribosomal genes in Escherichia coli.
    Annu Rev Genet. 1986;20:297-326 PMID: 2434021
  39. Bent helical structure in kinetoplast DNA.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7664-8 PMID: 16593261
  40. Potential binding sites of the trans-activator FIS are present upstream of all rRNA operons and of many but not all tRNA operons.
    Biochim Biophys Acta. 1990 Aug 27;1050(1-3):302-6 PMID: 2207159
  41. Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA.Fe(II).
    Proc Natl Acad Sci U S A. 1982 Sep;79(18):5470-4 PMID: 6291045
  42. Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphate.
    J Bacteriol. 1982 Sep;151(3):1261-8 PMID: 6179924
  43. The mechanism of trans-activation of the Escherichia coli operon thrU(tufB) by the protein FIS. A model.
    Nucleic Acids Res. 1992 Aug 11;20(15):4077-81 PMID: 1380692
  44. Mutational analysis of a prokaryotic recombinational enhancer element with two functions.
    EMBO J. 1989 Feb;8(2):577-85 PMID: 2656257
  45. Regulation of ribosome production in Escherichia coli: synthesis and stability of ribosomal RNA and of ribosomal protein messenger RNA at different growth rates.
    J Mol Biol. 1977 Sep 25;115(3):335-54 PMID: 338910
  46. Physiological effects of the fructose-1,6-diphosphate aldolase ts8 mutation on stable RNA synthesis in Escherichia coli.
    J Bacteriol. 1991 Oct;173(19):6249-57 PMID: 1717436
  47. Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli.
    EMBO J. 1992 Nov;11(11):4175-85 PMID: 1396599
  48. Characterization of RNA and DNA synthesis in Escherichia coli strains devoid of ppGpp.
    J Biol Chem. 1993 May 25;268(15):10851-62 PMID: 7684368
  49. Protein H1: a role for chromatin structure in the regulation of bacterial gene expression and virulence?
    Mol Microbiol. 1990 Dec;4(12):2007-12 PMID: 2128526
  50. The elongation factor EF-Tu from E. coli binds to the upstream activator region of the tRNA-tufB operon.
    Nucleic Acids Res. 1988 Nov 11;16(21):10183-97 PMID: 3057439
  51. Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro.
    J Mol Biol. 1991 Aug 5;220(3):555-68 PMID: 1870123
  52. Stringent control in E. coli.
    Annu Rev Genet. 1979;13:393-415 PMID: 94252
  53. FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions.
    J Bacteriol. 1992 Feb;174(3):921-9 PMID: 1732224
  54. The role of FIS in trans activation of stable RNA operons of E. coli.
    EMBO J. 1990 Mar;9(3):727-34 PMID: 1690124
  55. Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.
    Cell. 1987 Sep 11;50(6):901-8 PMID: 2957063
  56. Mutations in bglY, the structural gene for the DNA-binding protein H1, affect expression of several Escherichia coli genes.
    Biochimie. 1990 Dec;72(12):889-91 PMID: 2128918
  57. Requirement for an upstream element for optimal transcription of a bacterial tRNA gene.
    Nature. 1983 Sep 15-21;305(5931):248-50 PMID: 6350894
  58. Differential sensitivity of gene expression in vitro to inhibitors of DNA gyrase.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3304-8 PMID: 226966
  59. Promoter selectivity of the stationary-phase forms of Escherichia coli RNA polymerase and conversion in vitro of the S1 form enzyme into a log-phase enzyme-like form.
    Nucleic Acids Res. 1992 Jan 25;20(2):257-61 PMID: 1741250
  60. The structural basis of the high in vivo strength of the rRNA P2 promoter of Escherichia coli.
    Gene. 1989 May 15;78(1):189-94 PMID: 2670680
  61. Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli.
    Cell. 1993 Jan 29;72(2):165-8 PMID: 8425216
  62. Promoter occlusion during ribosomal RNA transcription.
    Cell. 1988 Sep 23;54(7):985-92 PMID: 3416358
  63. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli.
    J Bacteriol. 1992 Dec;174(24):8043-56 PMID: 1459953
  64. Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro.
    Nucleic Acids Res. 1988 Oct 25;16(20):9789-809 PMID: 3054811
  65. Ribosome associated protein(s) specifically bind(s) to the upstream activator sequence of the E. coli rrnA P1 promoter.
    Nucleic Acids Res. 1989 Dec 11;17(23):9811-22 PMID: 2690009
  66. G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor.
    Cell. 1985 Jul;41(3):771-80 PMID: 3159478
  67. The signal for growth rate control and stringent sensitivity in E. coli is not restricted to a particular sequence motif within the promoter region.
    Nucleic Acids Res. 1990 Nov 11;18(21):6271-5 PMID: 2243774
  68. Regulatory elements downstream of the promoter of an rRNA gene of E. coli.
    Biochim Biophys Acta. 1990 Aug 27;1050(1-3):312-6 PMID: 2207160
  69. Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS.
    Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10907-11 PMID: 1961761
  70. Stringent and growth control of rRNA synthesis in Escherichia coli are both mediated by ppGpp.
    J Biol Chem. 1988 Feb 25;263(6):2597-602 PMID: 2449428
  71. Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer.
    Cell. 1985 Jul;41(3):781-91 PMID: 2988787
  72. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
  73. Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella.
    Cell. 1984 Dec;39(3 Pt 2):643-52 PMID: 6096016
  74. The E.coli fis promoter is subject to stringent control and autoregulation.
    EMBO J. 1992 Mar;11(3):1075-83 PMID: 1547773
  75. Studies in vivo on Escherichia coli RNA polymerase mutants altered in the stringent response.
    Mol Gen Genet. 1988 Aug;213(2-3):379-87 PMID: 2460732
  76. Autoregulatory expression of the Escherichia coli hns gene encoding a nucleoid protein: H-NS functions as a repressor of its own transcription.
    Mol Gen Genet. 1993 Jan;236(2-3):171-8 PMID: 8437561
  77. Chain growth rate of -galactosidase during exponential growth and amino acid starvation.
    J Mol Biol. 1973 Mar 25;75(1):109-18 PMID: 4576588
  78. Pausing and attenuation of in vitro transcription in the rrnB operon of E. coli.
    Cell. 1981 Dec;27(3 Pt 2):523-31 PMID: 6086107
  79. Metabolic growth rate control in Escherichia coli may be a consequence of subsaturation of the macromolecular biosynthetic apparatus with substrates and catalytic components.
    Microbiol Rev. 1990 Jun;54(2):89-100 PMID: 1694554
  80. Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria.
    Cell. 1990 Nov 2;63(3):631-42 PMID: 2171779
Article Info
Journal
Archives of microbiology
Abbr.
Arch Microbiol
ISSN
0302-8933
Published
1994-00-00
Pages
100-9
Language
English
Region
Germany
NLM ID
0410427
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]